View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9587_low_5 (Length: 278)
Name: NF9587_low_5
Description: NF9587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9587_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 39846401 - 39846143
Alignment:
| Q |
1 |
ggagtataaatcgacgatataagattccggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacaggtttaggtggaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846401 |
ggagtataaatcgacgatataagattccggcaactctaatattgccgccaaaatgttcagtggccggtggggtaggtggagcacaggtttaggtggaatg |
39846302 |
T |
|
| Q |
101 |
gttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtacttattaaatttatttctttatatatagacaaggattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846301 |
gttaaatgcataaattatgtggccgtaaaataaatactttgatcgaaacgactaatatgtacttattaaatttatttctttatatatagacaaggattgt |
39846202 |
T |
|
| Q |
201 |
ctagtttttcaagagaaaaaagggtatatggctaaaagccccatgataggggggatgtt |
259 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39846201 |
ctagtttttcaagagaaaaaagggaatatggctaaaagccccatgataggggggatgtt |
39846143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 35163180 - 35162922
Alignment:
| Q |
1 |
ggagtataaatcgacgatataagattccggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacaggtttaggtggaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
35163180 |
ggagtataaatcgacgatataagattccggcaactctaatattgccgtcaaaatgttcagtggccggtggggaaggtggagcacaggttggggtggaatg |
35163081 |
T |
|
| Q |
101 |
gttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtacttattaaatttatttctttatatatagacaaggattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35163080 |
gttaaatgcataaattatgtggccgtaaaataattactttgatcgaaacgactaatatgtacttattaaatttatttctttatatatagacaaggattgt |
35162981 |
T |
|
| Q |
201 |
ctagtttttcaagagaaaaaagggtatatggctaaaagccccatgataggggggatgtt |
259 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
35162980 |
ctagtttttcaagagaaaaaagggaatatggctaaaagccccatggtaggggggatgtt |
35162922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 44796940 - 44797198
Alignment:
| Q |
1 |
ggagtataaatcgacgatataagattccggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacaggtttaggtggaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
44796940 |
ggagtataaatcgacgatataagattccggcaactctaatattgccgccaaaatgttcagtggccggtggggaaggtggagcacaggttggggtggaatg |
44797039 |
T |
|
| Q |
101 |
gttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtacttattaaatttatttctttatatatagacaaggattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44797040 |
gttaaatgcataaattatgtggccgtaaaataattactttgatcgaaaccactaatatgtacttattaaatttatttctttatatatagacaaggattgt |
44797139 |
T |
|
| Q |
201 |
ctagtttttcaagagaaaaaagggtatatggctaaaagccccatgataggggggatgtt |
259 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
44797140 |
ctagtttttcaagagaaaaaagggaatatggctaaaagccccatggtaggggggatgtt |
44797198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 39841349 - 39841098
Alignment:
| Q |
1 |
ggagtataaatcgacgatataagattccggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacaggtttaggtggaatg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
39841349 |
ggagtataaatccacgatataagattccggcaactctaatattgccgccaaaatgttcagtggccggtggggaaggtggagcacaggttggggtggaatg |
39841250 |
T |
|
| Q |
101 |
gttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtacttattaaatttatttctttatatatagacaaggattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39841249 |
gttaaatgcataaattatgtggccgtaaaataaatactttgatcgaaacgact-atatgtacttactaaatttatttctttatatatagacaaggattgt |
39841151 |
T |
|
| Q |
201 |
ctagtttttcaagagaaaaaagggtatatggctaaaagccccatgataggggg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39841150 |
ctagtttttcaagagaaaaaagggtatatggctaaaagccccatgataggggg |
39841098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University