View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9587_low_9 (Length: 251)

Name: NF9587_low_9
Description: NF9587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9587_low_9
NF9587_low_9
[»] chr5 (17 HSPs)
chr5 (6-182)||(14706348-14706529)
chr5 (163-235)||(18704103-18704174)
chr5 (163-235)||(35135729-35135801)
chr5 (163-235)||(10907310-10907382)
chr5 (163-235)||(36539677-36539749)
chr5 (165-212)||(13224362-13224409)
chr5 (163-230)||(37063146-37063213)
chr5 (167-214)||(39128574-39128621)
chr5 (163-210)||(39919738-39919785)
chr5 (163-229)||(20982208-20982274)
chr5 (163-209)||(40048373-40048419)
chr5 (165-214)||(7096215-7096264)
chr5 (165-214)||(12595539-12595588)
chr5 (186-235)||(14295460-14295509)
chr5 (163-235)||(4991010-4991082)
chr5 (163-231)||(9202819-9202887)
chr5 (162-198)||(29362924-29362960)
[»] chr1 (25 HSPs)
chr1 (156-235)||(45999355-45999434)
chr1 (163-235)||(44928223-44928295)
chr1 (165-235)||(15360827-15360897)
chr1 (164-236)||(4200161-4200233)
chr1 (170-235)||(44936657-44936722)
chr1 (163-235)||(29793713-29793785)
chr1 (171-235)||(48830143-48830207)
chr1 (154-209)||(4768917-4768972)
chr1 (164-203)||(38651508-38651547)
chr1 (170-236)||(172644-172709)
chr1 (154-192)||(49928852-49928890)
chr1 (169-235)||(50998489-50998555)
chr1 (163-232)||(870976-871045)
chr1 (163-224)||(4202207-4202268)
chr1 (165-234)||(24146328-24146396)
chr1 (170-235)||(29007783-29007848)
chr1 (174-235)||(49517012-49517073)
chr1 (175-211)||(4777376-4777412)
chr1 (163-203)||(6659634-6659674)
chr1 (163-203)||(13037795-13037835)
chr1 (163-231)||(17269181-17269249)
chr1 (156-208)||(34619472-34619524)
chr1 (163-203)||(37818395-37818435)
chr1 (166-230)||(42336596-42336660)
chr1 (170-226)||(50319230-50319286)
[»] chr6 (14 HSPs)
chr6 (166-235)||(10452427-10452496)
chr6 (168-235)||(29274296-29274363)
chr6 (163-235)||(33068628-33068700)
chr6 (156-235)||(4006638-4006717)
chr6 (163-209)||(9559634-9559680)
chr6 (154-203)||(10836743-10836792)
chr6 (163-235)||(11340692-11340764)
chr6 (163-211)||(32917157-32917205)
chr6 (156-230)||(323735-323809)
chr6 (169-235)||(7785809-7785875)
chr6 (166-227)||(6014469-6014530)
chr6 (163-235)||(10154152-10154224)
chr6 (171-235)||(24836266-24836330)
chr6 (163-203)||(31461609-31461649)
[»] chr2 (18 HSPs)
chr2 (163-235)||(10143103-10143175)
chr2 (163-209)||(3611157-3611203)
chr2 (167-229)||(13630354-13630416)
chr2 (163-233)||(17952770-17952840)
chr2 (163-233)||(28803575-28803645)
chr2 (162-235)||(4550707-4550780)
chr2 (162-235)||(25609726-25609799)
chr2 (163-235)||(28902008-28902080)
chr2 (156-235)||(34764296-34764373)
chr2 (164-203)||(2416245-2416284)
chr2 (173-232)||(3458598-3458657)
chr2 (164-235)||(18962105-18962176)
chr2 (166-235)||(35539654-35539726)
chr2 (163-236)||(9478230-9478303)
chr2 (163-208)||(44589966-44590011)
chr2 (163-235)||(3673738-3673810)
chr2 (163-235)||(11344351-11344423)
chr2 (163-234)||(27288564-27288633)
[»] chr3 (19 HSPs)
chr3 (156-234)||(1395595-1395673)
chr3 (163-234)||(41028919-41028990)
chr3 (154-235)||(24235750-24235831)
chr3 (164-235)||(3182429-3182500)
chr3 (164-235)||(20192673-20192744)
chr3 (168-235)||(23785191-23785258)
chr3 (163-234)||(49586984-49587054)
chr3 (163-209)||(16790181-16790227)
chr3 (163-209)||(39971250-39971296)
chr3 (165-235)||(43116495-43116565)
chr3 (156-209)||(2128344-2128397)
chr3 (163-208)||(20173982-20174027)
chr3 (163-232)||(27792803-27792872)
chr3 (163-227)||(41159040-41159102)
chr3 (165-230)||(53736185-53736250)
chr3 (163-203)||(26878048-26878088)
chr3 (163-203)||(28283676-28283716)
chr3 (156-184)||(37138270-37138298)
chr3 (158-198)||(42536953-42536993)
[»] scaffold0590 (1 HSPs)
scaffold0590 (163-231)||(1145-1213)
[»] scaffold0275 (1 HSPs)
scaffold0275 (163-231)||(2762-2830)
[»] chr8 (15 HSPs)
chr8 (163-235)||(3945205-3945277)
chr8 (163-234)||(11494084-11494155)
chr8 (156-209)||(1929975-1930028)
chr8 (163-208)||(10114421-10114466)
chr8 (159-203)||(1561206-1561250)
chr8 (163-227)||(11188230-11188294)
chr8 (163-234)||(3645884-3645955)
chr8 (170-229)||(5071040-5071099)
chr8 (163-234)||(14280469-14280540)
chr8 (163-210)||(31916546-31916593)
chr8 (164-201)||(13652147-13652184)
chr8 (164-201)||(13710790-13710827)
chr8 (165-230)||(29056063-29056128)
chr8 (163-203)||(9928187-9928227)
chr8 (163-235)||(10727128-10727200)
[»] chr4 (17 HSPs)
chr4 (163-235)||(8130105-8130177)
chr4 (147-235)||(21593079-21593166)
chr4 (163-235)||(30207638-30207709)
chr4 (171-235)||(44119229-44119293)
chr4 (163-234)||(19422349-19422420)
chr4 (168-234)||(25487613-25487679)
chr4 (163-235)||(30024631-30024703)
chr4 (163-235)||(54325104-54325176)
chr4 (154-225)||(23815292-23815363)
chr4 (152-197)||(4663801-4663846)
chr4 (164-209)||(4798652-4798697)
chr4 (163-208)||(28623220-28623265)
chr4 (163-224)||(47970249-47970310)
chr4 (166-235)||(49219073-49219142)
chr4 (163-203)||(4191670-4191710)
chr4 (163-235)||(24160562-24160634)
chr4 (167-235)||(30338659-30338727)
[»] scaffold0024 (1 HSPs)
scaffold0024 (164-235)||(27508-27579)
[»] chr7 (9 HSPs)
chr7 (156-235)||(45813247-45813326)
chr7 (147-235)||(5276139-5276227)
chr7 (164-232)||(33894555-33894622)
chr7 (163-226)||(7244633-7244696)
chr7 (163-230)||(27492726-27492793)
chr7 (164-235)||(28165023-28165094)
chr7 (163-236)||(11208380-11208453)
chr7 (170-210)||(1432059-1432099)
chr7 (173-209)||(3968288-3968324)
[»] scaffold0549 (2 HSPs)
scaffold0549 (163-235)||(1791-1863)
scaffold0549 (163-235)||(3881-3953)
[»] scaffold0100 (1 HSPs)
scaffold0100 (163-203)||(42548-42588)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 14706529 - 14706348
Alignment:
Q  6 gagtttggtgttgtagtgaatgaaaatttgaatggnnnnnnnnn-acttgtttatcattcttgtcaatagccttttcttgctgctgct----tggaaacn 100  Q
    |||| ||||||||||||||||||||||||||||||          || |||||||||||||| ||||||||||||||||||||||       |||||||     
T  14706529 gagtatggtgttgtagtgaatgaaaatttgaatggttttttttttacctgtttatcattcttctcaatagccttttcttgctgcttggaaagtggaaact 14706430  T
Q  101 nnnnnngtggtttctgttaggccctatttcgttaaacagcttaattattaggcgtttatagcataagtgcttatgtataagt 182  Q
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14706429 ttttttgtggtttctgttaggccctatttcgttaaacaacttaattattaggcgtttatagcataagtgcttatgtataagt 14706348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 18704174 - 18704103
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||| ||||||||||||||| ||||||| |||||||||| ||||| ||||||| |||| ||||||||||||    
T  18704174 ataagttcttatgtataagttatttctataacaaaagataa-ataaagtcaagctatttttatataagctata 18704103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 35135801 - 35135729
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||| ||||||||||| || ||||||| |||||||||| ||||| |||| || |||||||||||||||||    
T  35135801 ataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctata 35135729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 10907310 - 10907382
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||| |||||||||||||| ||||||||| || | ||| |||||||||| ||  |||||||||| |||||    
T  10907310 ataagtgtttatgtataagttatttctatagctaatggtaaaataaaatcaaactactttcatataatctata 10907382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 36539677 - 36539749
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||| |||| || || | || |||||||||| ||||| |||| || |||||||||||||||||    
T  36539677 ataagtgcttatgtgtaagctatttgtttatcaaaagataaaataaagtcaacctgttttcatataagctata 36539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 13224362 - 13224409
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatc 212  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||||||    
T  13224362 aagtgcttatgtataagctatttctataacaaaagataaaataaaatc 13224409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 37063213 - 37063146
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataag 230  Q
    |||| |||||||||||||  || ||||||| |||||||||| ||||| |||| || ||||||||||||    
T  37063213 ataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 39128574 - 39128621
Alignment:
Q  167 gtgcttatgtataagttaattctatagcaaaagataacataaaatcaa 214  Q
    ||||||||||||||| |||||||||| |||||||||| ||||| ||||    
T  39128574 gtgcttatgtataagctaattctataacaaaagataaaataaagtcaa 39128621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 39919785 - 39919738
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaa 210  Q
    ||||||||||||||||||| |||||||||| |||||||| | ||||||    
T  39919785 ataagtgcttatgtataagctaattctataacaaaagattaaataaaa 39919738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 20982274 - 20982208
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataa 229  Q
    ||||||||||||||||||| || ||||||| |||| ||||| ||||| |||| |  |||||||||||    
T  20982274 ataagtgcttatgtataagctatttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 40048419 - 40048373
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||||||||||||||  ||||||| |||||||||| |||||    
T  40048419 ataagtgcttatgtataagttgtttctataacaaaagataaaataaa 40048373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 7096264 - 7096215
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatcaa 214  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||| ||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 7096215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 12595588 - 12595539
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatcaa 214  Q
    |||||||| |||||||| || |||||||||||||||||| ||||| ||||    
T  12595588 aagtgcttgtgtataagctatttctatagcaaaagataaaataaattcaa 12595539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 14295460 - 14295509
Alignment:
Q  186 ttctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||| |||||||||| ||||| |||| || |||||||||||||||||    
T  14295460 ttctataacaaaagataaaataaagtcaaactgttttcatataagctata 14295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 4991082 - 4991010
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||| || |||||||| || || |||| ||||||||||||||| |||||  | |||||||||||| ||||    
T  4991082 ataagtgtttgtgtataagctatttttataacaaaagataacataagatcaatttattttcatataagttata 4991010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 9202887 - 9202819
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagc 231  Q
    |||||||||||| |||||| || |||| ||||||||||||| ||||| | ||  | |||||||||||||    
T  9202887 ataagtgcttatatataagctatttctgtagcaaaagataaaataaagttaaattgttttcatataagc 9202819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 29362924 - 29362960
Alignment:
Q  162 cataagtgcttatgtataagttaattctatagcaaaa 198  Q
    |||| |||||||||||||||||| |||||||||||||    
T  29362924 catatgtgcttatgtataagttatttctatagcaaaa 29362960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 45999434 - 45999355
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||||| ||||||||| || ||||||| |||||||||| ||||| |||| ||  ||||||||||||||||    
T  45999434 ttatagcataagtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctata 45999355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 44928295 - 44928223
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||||||| || |||  | ||||||||||| ||||| ||||||| |||||||||||||||||    
T  44928295 ataagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcatataagctata 44928223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 15360827 - 15360897
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||| |||||||| ||||| ||||||| |||||||||| ||||| |||| || |||||||||||||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctata 15360897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 4200161 - 4200233
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctatat 236  Q
    |||||| |||| ||||||||| || |||| |||||||||| ||||| ||||| | ||||||||||||||||||    
T  4200161 taagtgtttatatataagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctatat 4200233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 44936722 - 44936657
Alignment:
Q  170 cttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||| ||| |||||| ||||||| |||||||||| ||||| |||| || |||||||||||||||||    
T  44936722 cttaagtagaagttatttctataacaaaagataagataaagtcaaactattttcatataagctata 44936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 29793713 - 29793785
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||| ||| || ||||| | |||||||||||||||| | ||| | ||||| |||||||||||    
T  29793713 ataagtgcttatgtacaagctatttctacaacaaaagataacataaagttaagttgttttcgtataagctata 29793785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 48830207 - 48830143
Alignment:
Q  171 ttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||| ||||||  | |||||||| ||||| |||| || |||||||||||||||||    
T  48830207 ttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctata 48830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 4768972 - 4768917
Alignment:
Q  154 gtttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||| ||||||||||||||||| || | ||||| |||||||||| |||||    
T  4768972 gtttatagcaaaagtgcttatgtataagctattgctataccaaaagataaaataaa 4768917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 38651547 - 38651508
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  38651547 taagtgcttatgtataagctaattctataacaaaagataa 38651508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 172709 - 172644
Alignment:
Q  170 cttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctatat 236  Q
    |||||||||||| || ||||||| |||||||||||||||| | ||| ||||||| |||| |||||||    
T  172709 cttatgtataagctatttctataacaaaagataacataaagttaag-ttttttcttataggctatat 172644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 49928852 - 49928890
Alignment:
Q  154 gtttatagcataagtgcttatgtataagttaattctata 192  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  49928852 gtttatagcataagtgcttttgtataagttatttctata 49928890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 50998489 - 50998555
Alignment:
Q  169 gcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||| || |||| || |||||||||| | |||||||| ||  ||||||||||||||||    
T  50998489 gcttatgtataagctatttctgtaacaaaagataaaacaaaatcaaactactttcatataagctata 50998555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 870976 - 871045
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagct 232  Q
    ||||||||||||||||||  || || |||| |||||||||| || || ||||  ||||||||||||||||    
T  870976 ataagtgcttatgtataaactatttttataacaaaagataaaattaagtcaattttttttcatataagct 871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 4202268 - 4202207
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttca 224  Q
    ||||||||||| |||||||||| ||||||| ||||||||||   ||| ||||||| ||||||    
T  4202268 ataagtgcttaagtataagttatttctataacaaaagataaaccaaagtcaagctgttttca 4202207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 24146396 - 24146328
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    |||||||||||||||||||| ||||||| |||||| | | || ||||||| || |||||||||| |||||    
T  24146396 aagtgcttatgtataagttatttctataacaaaag-tcaaatgaaatcaaactattttcatatacgctat 24146328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 29007848 - 29007783
Alignment:
Q  170 cttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||| ||||||| ||||||| ||||||| ||  |||| |||| || |||||||||||||||||    
T  29007848 cttatgtctaagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctata 29007783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 49517012 - 49517073
Alignment:
Q  174 tgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||| ||||||| |||||||||| ||||| ||||  | ||||||| |||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctata 49517073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 4777412 - 4777376
Alignment:
Q  175 gtataagttaattctatagcaaaagataacataaaat 211  Q
    |||||||||| |||||||||||||||||| |||||||    
T  4777412 gtataagttatttctatagcaaaagataaaataaaat 4777376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 6659634 - 6659674
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  6659634 ataagtgcttatgtataaactatttctatagcaaaagataa 6659674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 13037795 - 13037835
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    ||||||||||||||||||| || ||||||| ||||||||||    
T  13037795 ataagtgcttatgtataagctatttctataacaaaagataa 13037835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 17269181 - 17269249
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagc 231  Q
    |||||||||||||||||||||| ||||| | ||||||  || ||||| ||||  | |||||||||||||    
T  17269181 ataagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagc 17269249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 34619524 - 34619472
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataa 208  Q
    ||||||||||| ||||||||||||||  | ||||||| |||||||||| ||||    
T  34619524 ttatagcataattgcttatgtataagccatttctataacaaaagataaaataa 34619472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 37818395 - 37818435
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    |||||||||||||||||||||| ||||||| ||| ||||||    
T  37818395 ataagtgcttatgtataagttatttctataacaagagataa 37818435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 42336596 - 42336660
Alignment:
Q  166 agtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataag 230  Q
    |||||||||||||| |||| || |||| ||||| |||| ||||| ||||||  ||||||||||||    
T  42336596 agtgcttatgtataggttatttttataacaaaaaataaaataaagtcaagcaattttcatataag 42336660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 50319230 - 50319286
Alignment:
Q  170 cttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcata 226  Q
    |||||||||||| || ||||||| |||||||||| ||||| ||||| | ||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagtcaagttgttttcata 50319286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 10452496 - 10452427
Alignment:
Q  166 agtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||||| || ||||||| ||||| |||| |||||||||| || |||||||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctata 10452427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 29274363 - 29274296
Alignment:
Q  168 tgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||| || |||||||||||||||||| ||||| ||||  | |||||||||||||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctata 29274296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 33068700 - 33068628
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||| ||||||||||||||||| ||||||| |||||||||| |||| ||||| || |||||| ||||| ||||    
T  33068700 ataaatgcttatgtataagttatttctataacaaaagataaaataatatcaaactgttttcaaataagatata 33068628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 4006638 - 4006717
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||||||||| ||||| || ||||||| |||| ||||| ||||| ||||  | |||| ||||||||||||    
T  4006638 ttatagcataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctata 4006717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 9559680 - 9559634
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||    
T  9559680 ataagcgcttatgtataagttatttctatagcaaaagataaaataaa 9559634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 10836743 - 10836792
Alignment:
Q  154 gtttatagcataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    |||||||||||||| ||||||||||||||||  |||||| ||||||||||    
T  10836743 gtttatagcataagcgcttatgtataagttatatctataacaaaagataa 10836792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 11340764 - 11340692
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||| |||||| |||||||||| |||||||||| ||||| | ||  | |||||||||| ||||||    
T  11340764 ataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctata 11340692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 32917157 - 32917205
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaat 211  Q
    ||||||||||||||||||| || ||| |||||||||||||| |||||||    
T  32917157 ataagtgcttatgtataagctatttcaatagcaaaagataaaataaaat 32917205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 323735 - 323809
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataag 230  Q
    ||||| |||||||| || |||||||| || |||||||  ||||||||| ||||| |||| || ||||||||||||    
T  323735 ttataacataagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcatataag 323809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 7785875 - 7785809
Alignment:
Q  169 gcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||| || ||||||| || |||| |||||||||| ||||| |||| || |||||||||||||||||    
T  7785875 gcttacgtgtaagttacttatataccaaaagataaaataaagtcaaactcttttcatataagctata 7785809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 6014469 - 6014530
Alignment:
Q  166 agtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatat 227  Q
    ||||||||||||| || |||||||| | |||||||||||||||| |||| || || ||||||    
T  6014469 agtgcttatgtattagctaattctacaacaaaagataacataaagtcaacctattctcatat 6014530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 10154152 - 10154224
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||| |||| ||| |  |||||||| ||||||||| ||||| |||| || |||||||||||| ||||    
T  10154152 ataagtgcttctgtacaagctgtttctatagaaaaagataaaataaagtcaaactgttttcatataagttata 10154224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 24836330 - 24836266
Alignment:
Q  171 ttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||| ||||||| |||||||||| ||||| ||||  | ||||| ||||| |||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttcgtataaactata 24836266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 31461609 - 31461649
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    ||||||||||||||||||| || ||||||| ||||||||||    
T  31461609 ataagtgcttatgtataagctatttctataacaaaagataa 31461649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 10143103 - 10143175
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||||||||||| ||||||| |||||||||| || || |||| || |||| ||||||||||||    
T  10143103 ataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctata 10143175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 3611157 - 3611203
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||    
T  3611157 ataagtgcttatgtataagttatttctatagcaaaaggtaaaataaa 3611203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 13630416 - 13630354
Alignment:
Q  167 gtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataa 229  Q
    |||||||||||||||||| |||| || |||||||||| ||||| |||| || |||||||||||    
T  13630416 gtgcttatgtataagttatttctctatcaaaagataagataaagtcaaactgttttcatataa 13630354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 17952840 - 17952770
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagcta 233  Q
    ||||| |||||| |||||| || ||||||| |||||||||| ||||| |||| || |||||||||||||||    
T  17952840 ataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 28803645 - 28803575
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagcta 233  Q
    |||||||||||| ||||||||| ||| ||| |||||||||| ||||| |||| ||  ||||||||||||||    
T  28803645 ataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagcta 28803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 4550707 - 4550780
Alignment:
Q  162 cataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||||||||||  ||| |||  ||||||||| ||||  ||||||| ||||||||||| |||||    
T  4550707 cataagtgcttatgtataagttgtttccataataaaagataaaataacgtcaagctgttttcatataaactata 4550780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 25609726 - 25609799
Alignment:
Q  162 cataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||||||||| || |||||||  ||||||||| ||||| ||||  | ||||| |||||||||||    
T  25609726 cataagtgcttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctata 25609799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 28902008 - 28902080
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||||||| || || |||| || ||| ||| ||||||| || || |||||||||||||||||    
T  28902008 ataagtgcttatgtataagctatttttataacataagttaaaataaaattaaactgttttcatataagctata 28902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 34764296 - 34764373
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||| ||||||||||||||| || ||| ||   ||||||||| |||||||||| ||||||  ||||||||||||    
T  34764296 ttatagcatacgtgcttatgtataagctatttcaatgaaaaaagataaaataaaatcaaacttttt--atataagctata 34764373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 2416245 - 2416284
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  2416245 taagtgcttatgtataagttatttctgtagcaaaagataa 2416284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 3458598 - 3458657
Alignment:
Q  173 atgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagct 232  Q
    |||| ||||||| || |||| |||||||||| ||||| |||| |||||||||||||||||    
T  3458598 atgtctaagttatttttataacaaaagataaaataaagtcaaacttttttcatataagct 3458657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 18962176 - 18962105
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||| || || || |||| |||||||||| ||||| | || || |||||||||||||||||    
T  18962176 taagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctata 18962105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 35539654 - 35539726
Alignment:
Q  166 agtgcttatgtataagttaattctatagca---aaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||| ||| ||| ||||||   |||||||| |||||||||| || |||||||||||| ||||    
T  35539654 agtgcttatgtataaattatttcgatagcaggaaaagataaaataaaatcaaactattttcatataagttata 35539726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 9478230 - 9478303
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctatat 236  Q
    ||||||| ||||||||||| || ||||||| ||  |||||| ||||| ||||  | ||||||||||||||||||    
T  9478230 ataagtgtttatgtataagctatttctataacagtagataaaataaactcaaaatattttcatataagctatat 9478303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 44589966 - 44590011
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataa 208  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||||    
T  44589966 ataagtgcttatgtataagttgtttctatagcaaatgataagataa 44590011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 3673738 - 3673810
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||||| ||||| ||||||| ||||| |||| ||||| | ||  | |||||||||||| ||||    
T  3673738 ataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataagttata 3673810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 11344423 - 11344351
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||| ||||| || ||||||| |||||||||| | ||| ||||  | |||||||| ||||||||    
T  11344423 ataagtgcttatgcataagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctata 11344351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 27288564 - 27288633
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    ||||||||||||||| |||||  |||||||  ||||||||| |||||||||| || |||  |||||||||||    
T  27288564 ataagtgcttatgtaaaagttgtttctataataaaagataaaataaaatcaaactgttt--atataagctat 27288633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 1395595 - 1395673
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    |||||||| |||||| |||||||||| || ||||||| |||||||||| ||||| ||||  | ||||||||||||||||    
T  1395595 ttatagcaaaagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 41028990 - 41028919
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    ||||||||||||||||||| || ||||||| ||||||| || ||||| |||| || |||||| |||||||||    
T  41028990 ataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagctat 41028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 24235831 - 24235750
Alignment:
Q  154 gtttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||| ||||||  ||| ||||||||||| ||||||| |||||||||| ||||| |||| || |||  ||||||||||||    
T  24235831 gtttataacataagcacttgtgtataagttatttctataacaaaagataatataaagtcaaactatttgaatataagctata 24235750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 3182500 - 3182429
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||| ||||  | |||||||| ||| ||||    
T  3182500 taagtgtttatgtataagttacttctatagaaaaagataaaataaagtcaaattgttttcatacaagttata 3182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 20192744 - 20192673
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||||||| || || |||| |||||||||| ||||| |||| |  ||||||||||| |||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctata 20192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 23785191 - 23785258
Alignment:
Q  168 tgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||| |||||||| ||||| |||| ||||||| ||||| |||| || | |||||||||||||||    
T  23785191 tgcttatgcataagttatttctacagcagaagataaaataaagtcaaactgtattcatataagctata 23785258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 49587054 - 49586984
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    |||||||||||  |||||| || ||||||| |||||||||| ||||| |||| || ||||||||||||||||    
T  49587054 ataagtgcttac-tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 16790227 - 16790181
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  16790227 ataagtgcttatatataagttatttctataacaaaagataaaataaa 16790181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 39971250 - 39971296
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||||||||||||||| || |||| |||||||||| |||||    
T  39971250 ataagtgcttatgtataagttacttatataacaaaagataaaataaa 39971296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 43116565 - 43116495
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||| |||||| |||| || ||||||| |||||||||| || ||||||| |  |||||||||||||||||    
T  43116565 aagtgtttatgtgtaagctatttctataacaaaagataaaatcaaatcaaacaattttcatataagctata 43116495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 2128397 - 2128344
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||||| | ||||||||||| || ||||||| |||||||||| |||||    
T  2128397 ttatagcataagcgtttatgtataagctatttctataacaaaagataaaataaa 2128344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 20174027 - 20173982
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataa 208  Q
    |||||||||||||||| ||||| ||||||| |||||||||| ||||    
T  20174027 ataagtgcttatgtattagttatttctataacaaaagataaaataa 20173982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 27792803 - 27792872
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagct 232  Q
    ||||||||||||||||||| || ||| | | |||||||||| ||||  |||| || ||||||||||||||    
T  27792803 ataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagct 27792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 41159040 - 41159102
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatat 227  Q
    |||||||||||||||||||||| | ||||| | |||||||| ||||| ||||  |||||||||||    
T  41159040 ataagtgcttatgtataagttattcctataactaaagataaaataaagtcaa--ttttttcatat 41159102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 53736250 - 53736185
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataag 230  Q
    ||||||||| |||| ||||| ||||||| |||||||||| ||||  |||| || ||||||||||||    
T  53736250 aagtgcttacgtatgagttatttctataacaaaagataaaataatgtcaaactattttcatataag 53736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 26878048 - 26878088
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  26878048 ataagtgcttatgtataaattgtttctatagcaaaagataa 26878088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 28283716 - 28283676
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    ||||||||||||| |||||||| ||||||| ||||||||||    
T  28283716 ataagtgcttatgcataagttacttctataacaaaagataa 28283676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 37138270 - 37138298
Alignment:
Q  156 ttatagcataagtgcttatgtataagtta 184  Q
    |||||||||||||||||||||||||||||    
T  37138270 ttatagcataagtgcttatgtataagtta 37138298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 42536953 - 42536993
Alignment:
Q  158 atagcataagtgcttatgtataagttaattctatagcaaaa 198  Q
    ||||||||||| ||||||||||||||||| ||||| |||||    
T  42536953 atagcataagttcttatgtataagttaatcctataacaaaa 42536993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 1213 - 1145
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagc 231  Q
    ||||||||||||||||||| || ||||||| |||||||||| ||||| |||| || || ||||||||||    
T  1213 ataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 2762 - 2830
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagc 231  Q
    ||||||||||||||||||| || ||||||| |||||||||| ||||| |||| || || ||||||||||    
T  2762 ataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 3945205 - 3945277
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||| |||| ||||||||| ||| ||| |||||||||| ||||||| ||||| |||| ||||||||||||    
T  3945205 ataagtgtttatatataagttatttcaataacaaaagataaaataaaatgaagctatttttatataagctata 3945277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 11494084 - 11494155
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    |||||||||| |||||| |||| ||  ||| |||||||||||||||| |||| |||||||||||||| ||||    
T  11494084 ataagtgcttttgtatatgttattttcataacaaaagataacataaagtcaaacttttttcatataaactat 11494155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 1929975 - 1930028
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||| ||| |||||||||||||||| |||||||| ||||||||| |||||    
T  1929975 ttatagcacaagcgcttatgtataagttatttctatagaaaaagataaaataaa 1930028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 10114421 - 10114466
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataa 208  Q
    ||||||||||||||||||| || |||||||||||||||||| ||||    
T  10114421 ataagtgcttatgtataagctatttctatagcaaaagataaaataa 10114466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 1561206 - 1561250
Alignment:
Q  159 tagcataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||    
T  1561206 tagcataagtgcttatgtataagttatttctataacgaaagataa 1561250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 11188294 - 11188230
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatat 227  Q
    |||||||||||||||||||||  ||||||| |||||||||| |||||| ||| || |||| ||||    
T  11188294 ataagtgcttatgtataagttgtttctataacaaaagataaaataaaaccaaactatttttatat 11188230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 3645955 - 3645884
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    |||||||||| |||||||| || |||||||  |||| |||| | |||||||| || ||||||||||||||||    
T  3645955 ataagtgcttgtgtataagctatttctataagaaaatataaaacaaaatcaaactattttcatataagctat 3645884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 5071099 - 5071040
Alignment:
Q  170 cttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataa 229  Q
    ||||||||||||||  |||||||| |||| |||| ||||| |||| ||||||||||||||    
T  5071099 cttatgtataagttgtttctatagtaaaatataaaataaagtcaaacttttttcatataa 5071040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 14280540 - 14280469
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    ||||| ||||||||||||  || |||||||||||||||||| || |||| ||  | ||||||||||||||||    
T  14280540 ataagcgcttatgtataacctatttctatagcaaaagataaaattaaattaaattgttttcatataagctat 14280469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 31916546 - 31916593
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaa 210  Q
    ||||| ||||||||||||| | |||||||| |||||||||||||||||    
T  31916546 ataagcgcttatgtataagcttattctataacaaaagataacataaaa 31916593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 13652147 - 13652184
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagat 201  Q
    |||||||||||||||||| || ||||||||||||||||    
T  13652147 taagtgcttatgtataagctatttctatagcaaaagat 13652184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 13710790 - 13710827
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagat 201  Q
    |||||||||||||||||| || ||||||||||||||||    
T  13710790 taagtgcttatgtataagctatttctatagcaaaagat 13710827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 29056128 - 29056063
Alignment:
Q  165 aagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataag 230  Q
    ||||| ||||||||||| || ||||| |||||||||||| ||||| ||||  | ||||||||||||    
T  29056128 aagtgtttatgtataagctacttctagagcaaaagataaaataaagtcaatttgttttcatataag 29056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 9928187 - 9928227
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  9928187 ataagtgtttatgtataagttatttctataacaaaagataa 9928227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 10727128 - 10727200
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||| ||||| || |||||||||||||||| | ||||| ||||  | |||||| ||||| ||||    
T  10727128 ataagtgcttatgcataagctatttctatagcaaaagatgaaataaattcaaagtgttttcacataagttata 10727200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 8130105 - 8130177
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||| |||| ||||  ||||||| |||||||||||||||| ||||  | |||||||||||||||||    
T  8130105 ataagtgcttacgtatgagttctttctataacaaaagataacataaagtcaaattattttcatataagctata 8130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 21593166 - 21593079
Alignment:
Q  147 attaggcgtttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||| | ||||||| |||||||||||||||||  || ||||||| | |||||||| ||||| |||| || |||||||||||||||||    
T  21593166 attaggtgcttatagcgtaagtgcttatgtataaactatttctataactaaagataaaataaagtcaa-ctattttcatataagctata 21593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 30207709 - 30207638
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||||| |||| ||||||| ||||| |||| || ||||||| || |||||||||||||||||    
T  30207709 ataagtgcttatgtatatgttagttctataacaaaaaataaaat-aaatcaaactgttttcatataagctata 30207638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 44119293 - 44119229
Alignment:
Q  171 ttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||||| |||||||||||||||||| | ||| ||||  | |||||||||||||||||    
T  44119293 ttatgtataagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagctata 44119229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 19422349 - 19422420
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    |||| ||||||||||||||||| ||||||| |||||||||  ||||| |||| | |||||||||||| ||||    
T  19422349 ataaatgcttatgtataagttatttctataacaaaagatataataaagtcaaacatttttcatataaactat 19422420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 25487679 - 25487613
Alignment:
Q  168 tgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctat 234  Q
    |||||||||||||| || ||||||| ||||| |||| ||||| ||| | ||||||||||||||||||    
T  25487679 tgcttatgtataagctatttctataacaaaaaataaaataaagtcacgtttttttcatataagctat 25487613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 30024631 - 30024703
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||| |||||| |||||||| ||||||| |||||||||| ||||| | ||  | |||||||||||||||||    
T  30024631 ataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctata 30024703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 54325176 - 54325104
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||| |||||||  || ||||||  |||||||||| ||||| |||| || |||||||||||||||||    
T  54325176 ataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctata 54325104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 23815292 - 23815363
Alignment:
Q  154 gtttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcat 225  Q
    ||||||||||||| |||| |||| ||||||| ||||||| |||||||||| ||||  |||| || |||||||    
T  23815292 gtttatagcataaatgctaatgtttaagttatttctataacaaaagataaaataatgtcaaactgttttcat 23815363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 4663846 - 4663801
Alignment:
Q  152 gcgtttatagcataagtgcttatgtataagttaattctatagcaaa 197  Q
    |||||||| | |||||||||||||||||||||| ||||||| ||||    
T  4663846 gcgtttatcgtataagtgcttatgtataagttatttctataacaaa 4663801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 4798697 - 4798652
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||||||||||| || ||||||| |||||||||| |||||    
T  4798697 taagtgcttatgtataagctatttctatatcaaaagataaaataaa 4798652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 28623220 - 28623265
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataa 208  Q
    |||||||||||||||||||||| || |||| |||||||||| ||||    
T  28623220 ataagtgcttatgtataagttatttatataacaaaagataaaataa 28623265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 47970249 - 47970310
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttca 224  Q
    ||||||||||||||||||| || ||||||| |||||||||| || || |||| || ||||||    
T  47970249 ataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 49219073 - 49219142
Alignment:
Q  166 agtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||| ||| |||||||||| ||||||| ||||| |||| ||||| ||||  | |||||||||||||||||    
T  49219073 agtggttaggtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctata 49219142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 4191670 - 4191710
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    ||||||||||||||||||| || ||||||| ||||||||||    
T  4191670 ataagtgcttatgtataagctatttctataacaaaagataa 4191710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 24160634 - 24160562
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||  ||||| |  ||||||| |||||||||| ||||| |||| || ||||||| |||||||||    
T  24160634 ataagtgcttataaataagctttttctataacaaaagataatataaattcaaactattttcatgtaagctata 24160562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 30338727 - 30338659
Alignment:
Q  167 gtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||  || ||||||| |||||||||  ||||| | || || |||||||||||||||||    
T  30338727 gtgcttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctata 30338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 27508 - 27579
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||||||||| ||||||| || ||||||| ||||| ||||  | ||||||||||| |||||    
T  27508 taagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactata 27579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 45813326 - 45813247
Alignment:
Q  156 ttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||| |||||||| |||||| || ||||||| |||||||||| ||||| ||||  | ||||||||||| |||||    
T  45813326 ttatagcataggtgcttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctata 45813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 5276139 - 5276227
Alignment:
Q  147 attaggcgtttatagcataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||| |||||||| |  |||||||||||||||||| || || |||| |||||||||||||||| |||| |  |||||| | ||||||||    
T  5276139 attaagcgtttatcgtttaagtgcttatgtataagctatttttataacaaaagataacataaagtcaaaccgttttcacaaaagctata 5276227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 33894555 - 33894622
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagct 232  Q
    |||||||||||||||||| || ||||||| |||||||||| || || |||| || ||||||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 7244633 - 7244696
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcata 226  Q
    ||||||||||||||||||| || ||||||| |||||||||| | ||| |||| || ||||||||    
T  7244633 ataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcata 7244696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 27492726 - 27492793
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataag 230  Q
    |||||| |||||||||||  || ||||||| |||||| | | |||||||||| |||||||||||||||    
T  27492726 ataagttcttatgtataaactatttctataacaaaagttcaaataaaatcaaacttttttcatataag 27492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 28165023 - 28165094
Alignment:
Q  164 taagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    ||||||||||||||||||||  ||||||| |||||||||| || || ||||  | |||| ||||||||||||    
T  28165023 taagtgcttatgtataagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctata 28165094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 11208380 - 11208453
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctatat 236  Q
    ||||| |||||| |||||| |||||||| | |||||||||| ||||| |||| |  ||||||||||| ||||||    
T  11208380 ataagcgcttatatataagataattctacaacaaaagataaaataaactcaaaccgttttcatataaactatat 11208453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 1432099 - 1432059
Alignment:
Q  170 cttatgtataagttaattctatagcaaaagataacataaaa 210  Q
    ||||||||||||||| ||||||| |||||||||| ||||||    
T  1432099 cttatgtataagttatttctataacaaaagataaaataaaa 1432059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 3968324 - 3968288
Alignment:
Q  173 atgtataagttaattctatagcaaaagataacataaa 209  Q
    |||||||||||| |||||||||||||||||| |||||    
T  3968324 atgtataagttatttctatagcaaaagataaaataaa 3968288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 1863 - 1791
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||| |||||| |||||||||| |||||||||| ||||| | ||  | |||||||||| ||||||    
T  1863 ataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctata 1791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 3953 - 3881
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataacataaaatcaagcttttttcatataagctata 235  Q
    |||||||||||| |||||| |||||||||| |||||||||| ||||| | ||  | |||||||||| ||||||    
T  3953 ataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctata 3881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 42548 - 42588
Alignment:
Q  163 ataagtgcttatgtataagttaattctatagcaaaagataa 203  Q
    |||||||||||||||||||| | ||||||| ||||||||||    
T  42548 ataagtgcttatgtataagtcatttctataacaaaagataa 42588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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