View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_1 (Length: 465)
Name: NF9588_low_1
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_1 |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 17257096 - 17257543
Alignment:
| Q |
1 |
cctcttttacgagtggtgttggaacccaagggagtgccttcggagatagttttgagagggtgttttggggtgctgctgtacctgttttttctgatggctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17257096 |
cctcttttacgagtggtgttggaacccaagggagtgccttcggagatagttttgagagggtgttttggggtgctgctgtacctgttttttctgatggctg |
17257195 |
T |
|
| Q |
101 |
ctgtccacttttttactgttttgcgcctcatgtgtgcggctgtttccggcctgtgtgctgctgttttttgcgcctcacatgtgacaggaagtggttgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17257196 |
ctgtccacttttttactgttttgcgcctcatgtgtgcggctgtttccggcctgtgtgctgctgttttttgcgcctcacatgtgacaggaagtggttgatc |
17257295 |
T |
|
| Q |
201 |
agttttaggaggtcctgtgggtttattaggtgttttttctgctgggtggtttcctctttgtttctgctgttttgcggctttgcttgtgctagcacaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17257296 |
agttttaggaggtcctgtgggtttattaggtgttttttctgctgggtggtttcctctttgtttctgctgttttgcggctttgcttgtgctagcacaactg |
17257395 |
T |
|
| Q |
301 |
tgctgttaaactccgagtttgtaattcttgttgtcccattttagcacttcttgtgccgggatcgttatcaatatatatgctgattnnnnnnnncacaata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17257396 |
tgctgttaaactccgagtttgtaattcttgttgtcccgttttagcacttcttgtgccgggatcgttatcaatatatatgctgattaaaaaaaacacaata |
17257495 |
T |
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| Q |
401 |
tatgaagttaacacatcactgcattgtcttatgcgagctgcgtgaagt |
448 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
17257496 |
tatgaagttaacacatcactgcattgtcttatgtgagctgcttgaagt |
17257543 |
T |
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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 81147 - 81196
Alignment:
| Q |
329 |
tgttgtcccattttagcacttcttgtgccgggatcgttatcaatatatat |
378 |
Q |
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||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
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| T |
81147 |
tgttgtcccttttttgcacttcttgtgccgggctcgttatcaatatatat |
81196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Complemental strand, 4354367 - 4354328
Alignment:
| Q |
339 |
ttttagcacttcttgtgccgggatcgttatcaatatatat |
378 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |
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| T |
4354367 |
tttttgcacttcttgtgccgggctcgttatcaatatatat |
4354328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 138704 - 138736
Alignment:
| Q |
5 |
ttttacgagtggtgttggaacccaagggagtgc |
37 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
138704 |
ttttacgagtggagttggaacccaagggagtgc |
138736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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