View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9588_low_14 (Length: 291)

Name: NF9588_low_14
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9588_low_14
NF9588_low_14
[»] chr7 (4 HSPs)
chr7 (18-258)||(43653440-43653693)
chr7 (57-102)||(3341891-3341936)
chr7 (57-102)||(3345053-3345098)
chr7 (57-102)||(4027219-4027264)
[»] chr4 (2 HSPs)
chr4 (53-108)||(16200162-16200217)
chr4 (57-103)||(34166112-34166158)
[»] chr6 (1 HSPs)
chr6 (57-103)||(13853044-13853090)
[»] chr5 (1 HSPs)
chr5 (57-103)||(34186449-34186495)
[»] chr2 (1 HSPs)
chr2 (57-103)||(44949342-44949388)
[»] chr1 (2 HSPs)
chr1 (57-103)||(47912572-47912618)
chr1 (57-109)||(47991771-47991823)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 43653440 - 43653693
Alignment:
Q  18 atgtggttcataatatggacca--tacataagtaaagtaactgaatgaacctaaaaactcaattttgcttacaattagtaacggagggggtatccattaa 115  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43653440 atgtggttcataatatggaccacatacataagtaaagtaactgaatgaacctaaaaactcaattttgcttacaattagtaacggagggggtatccattaa 43653539  T
Q  116 actactcatgtgttgacaggttatcgaattttgtagtctcaaat-----------tgacatttctgtaactcatcaactcaaatgaaagcaaacactact 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||    
T  43653540 actactcatgtgttgacaggttatcgaattttgtagtctcaaattgatgatccaatgacatttctgtaactcatcaactcaaatgaaagcaaacactact 43653639  T
Q  205 aaactattgacaatcaaaacaggttccatacaacaaatcatttatttaattact 258  Q
    | ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43653640 acactattgacaatcaagacaggttccatacaacaaatcatttatttaattact 43653693  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 3341936 - 3341891
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggagg 102  Q
    ||||||||  |||||| ||||||||||||| |||||||||||||||    
T  3341936 tgaatgaatataaaaagtcaattttgcttataattagtaacggagg 3341891  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 3345098 - 3345053
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggagg 102  Q
    ||||||||  |||||| ||||||||||||| |||||||||||||||    
T  3345098 tgaatgaatttaaaaagtcaattttgcttataattagtaacggagg 3345053  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 4027264 - 4027219
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggagg 102  Q
    |||||||| ||||||||||||||||||||| | |||| ||||||||    
T  4027264 tgaatgaatctaaaaactcaattttgcttatatttagaaacggagg 4027219  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 16200217 - 16200162
Alignment:
Q  53 taactgaatgaacctaaaaactcaattttgcttacaattagtaacggagggggtat 108  Q
    |||||||||||||||||||| | || |||||||| |||| ||||||||||| ||||    
T  16200217 taactgaatgaacctaaaaagttaaatttgcttataattggtaacggagggagtat 16200162  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 34166158 - 34166112
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggaggg 103  Q
    |||||||||||||||| ||||||||||||| | |||| |||||||||    
T  34166158 tgaatgaacctaaaaagtcaattttgcttatatttagaaacggaggg 34166112  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 13853090 - 13853044
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggaggg 103  Q
    ||||||||| |||||| |||||||| |||| ||||||||||||||||    
T  13853090 tgaatgaacttaaaaagtcaatttttcttataattagtaacggaggg 13853044  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 34186449 - 34186495
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggaggg 103  Q
    |||||||||||||||||||||||||||||| | |||  |||||||||    
T  34186449 tgaatgaacctaaaaactcaattttgcttatatttaaaaacggaggg 34186495  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 44949388 - 44949342
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggaggg 103  Q
    |||||||||||||||| ||||||||||||| | |||| |||||||||    
T  44949388 tgaatgaacctaaaaagtcaattttgcttatatttagaaacggaggg 44949342  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 47912618 - 47912572
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggaggg 103  Q
    |||||||||||||||| ||||||||||||| | |||| |||||||||    
T  47912618 tgaatgaacctaaaaagtcaattttgcttatatttagaaacggaggg 47912572  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 47991823 - 47991771
Alignment:
Q  57 tgaatgaacctaaaaactcaattttgcttacaattagtaacggagggggtatc 109  Q
    |||||||||||||||| |||| |||||||| ||||  |||||||||| |||||    
T  47991823 tgaatgaacctaaaaagtcaaatttgcttataattcataacggagggagtatc 47991771  T

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