View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_15 (Length: 282)
Name: NF9588_low_15
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 52770868 - 52771130
Alignment:
| Q |
1 |
gcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaaccc |
100 |
Q |
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| T |
52770868 |
gcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaaccc |
52770967 |
T |
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| Q |
101 |
aacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaa |
200 |
Q |
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| T |
52770968 |
aacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaa |
52771067 |
T |
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| Q |
201 |
aaaagctatatacagtatcaaacccaaaactgcaagccatccggtagcatttgatgctgctgc |
263 |
Q |
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| T |
52771068 |
aaaagctatatacagtatcaaacccaaaactgcaagccatccggtagcatttgatgctgctgc |
52771130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 52766921 - 52767145
Alignment:
| Q |
18 |
agcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctgac |
117 |
Q |
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| T |
52766921 |
agcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaatccaattcacagtagctgac |
52767020 |
T |
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| Q |
118 |
ataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaaaaaagctatatacagta |
217 |
Q |
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| T |
52767021 |
atccctccacacattcctcggtactcctgcggatatacttcagagtttactgcccacggcacaggccccatccctggcgagaaaaatgcaatatataggg |
52767120 |
T |
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| Q |
218 |
tcaaacccaaaactgcaagccatcc |
242 |
Q |
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| T |
52767121 |
ccaaaccaacaaccgcaagccatcc |
52767145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 392926 - 392778
Alignment:
| Q |
16 |
acagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctg |
115 |
Q |
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||||||| |||||||||||| | | || |||| | ||| ||||||| |||||||| ||| ||||| || | ||| |||| ||||||||| || |||| |
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| T |
392926 |
acagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcgaaagaaagctctcggacacgatcaaatttgaaatccaacacacggtcgctg |
392827 |
T |
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| Q |
116 |
acataccaccacaaattcctctatattctttaggatatatctctgagtt |
164 |
Q |
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||| || ||||| || |||| |||||||| |||||||||||||||||| |
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| T |
392826 |
ccatgcccccacatatacctcgatattcttcaggatatatctctgagtt |
392778 |
T |
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