View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_17 (Length: 277)
Name: NF9588_low_17
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 5434612 - 5434870
Alignment:
| Q |
18 |
aaaacttaattctttttaatgcagaaaaaccacaacaccattgacagctcatagtctaaattttccagggagaaaac-----atatcattaaagcttaca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5434612 |
aaaacttaattctttttaatgcagaaaaaccacaacaccattgacagctcatagtctaaattttccagggagaaaactaaacatatcattaaagcttaca |
5434711 |
T |
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| Q |
113 |
acagcttaagcataagatcacaatctagcaaggatgtgttcttaagagccatatccaaaataagaatcaaacaaaagaaaccatg---aatacaataaaa |
209 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5434712 |
acagcttaagcataagatcataatctagcaaggatgtgttcttaagagccatatccaaaataagaatcaaacaaaagaaaccatgaataatacaataaaa |
5434811 |
T |
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| Q |
210 |
ctttttataaacctcttattcttttgaagaatctagcctcctgttgtttccacaggttc |
268 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5434812 |
ctttttccaaacctcttattcttttgaagaatctagcctcctgttgtttccacaggttc |
5434870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 536172 - 536236
Alignment:
| Q |
18 |
aaaacttaattctttttaatgcagaaaaaccacaacaccattgacagctcatagtctaaattttc |
82 |
Q |
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||||||| ||| |||||| |||||||||||||||||||| ||| || |||||| ||||||||| |
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| T |
536172 |
aaaacttcattgtttttagtgcagaaaaaccacaacacccttgccaaatcatagaataaattttc |
536236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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