View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_18 (Length: 264)
Name: NF9588_low_18
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 52712042 - 52712272
Alignment:
| Q |
1 |
tttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaacagatgccaccag |
100 |
Q |
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| T |
52712042 |
tttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaacagatgccaccag |
52712141 |
T |
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| Q |
101 |
caagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgtttggtctcttat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712142 |
caagtgtgatgacaaaactcatcctcttcatggtttggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgtttggtctcttat |
52712241 |
T |
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| Q |
201 |
atcatttgggtattaaaatcttctatctttt |
231 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
52712242 |
atcatttgggtataaaaatcttctatctttt |
52712272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 52717640 - 52717852
Alignment:
| Q |
2 |
ttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaacagatgccaccagc |
101 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | ||||||||||||||| |
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| T |
52717640 |
ttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacacagatgccaccagc |
52717739 |
T |
|
| Q |
102 |
aagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgtttggtctcttata |
201 |
Q |
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|||||| ||||||| ||| |||||| ||||||| ||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||| || |
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| T |
52717740 |
aagtgtcatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgtttggtctcttgta |
52717839 |
T |
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| Q |
202 |
tcatttgggtatt |
214 |
Q |
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|||||| |||||| |
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| T |
52717840 |
tcatttaggtatt |
52717852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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