View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9588_low_19 (Length: 258)

Name: NF9588_low_19
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9588_low_19
NF9588_low_19
[»] chr7 (10 HSPs)
chr7 (7-242)||(3743349-3743583)
chr7 (44-242)||(20145819-20146010)
chr7 (68-239)||(14987100-14987269)
chr7 (68-239)||(15416711-15416880)
chr7 (43-242)||(17600538-17600729)
chr7 (134-219)||(24832460-24832545)
chr7 (7-242)||(2546881-2547106)
chr7 (134-242)||(4173463-4173570)
chr7 (167-217)||(5531734-5531784)
chr7 (141-194)||(41131957-41132011)
[»] chr3 (15 HSPs)
chr3 (7-242)||(26010799-26011030)
chr3 (7-242)||(24699086-24699313)
chr3 (66-177)||(4765782-4765892)
chr3 (7-242)||(15686828-15687058)
chr3 (8-242)||(13428737-13428962)
chr3 (137-242)||(29614619-29614724)
chr3 (68-242)||(4769742-4769913)
chr3 (95-245)||(23378484-23378634)
chr3 (7-242)||(4832541-4832771)
chr3 (134-235)||(9033512-9033613)
chr3 (134-219)||(16242984-16243069)
chr3 (134-194)||(7148790-7148850)
chr3 (103-194)||(27304456-27304547)
chr3 (134-177)||(8737234-8737277)
chr3 (134-177)||(9089472-9089515)
[»] chr2 (9 HSPs)
chr2 (7-242)||(26650808-26651038)
chr2 (7-242)||(17402692-17402921)
chr2 (67-242)||(18929262-18929434)
chr2 (67-242)||(25520422-25520594)
chr2 (96-217)||(24543873-24543994)
chr2 (91-219)||(31404078-31404206)
chr2 (145-215)||(17676599-17676671)
chr2 (145-215)||(28760652-28760724)
chr2 (145-195)||(17636741-17636792)
[»] chr1 (11 HSPs)
chr1 (7-242)||(11013854-11014085)
chr1 (97-242)||(33103019-33103163)
chr1 (96-194)||(22607903-22608000)
chr1 (137-242)||(20150459-20150563)
chr1 (134-242)||(20146222-20146328)
chr1 (134-194)||(36571726-36571786)
chr1 (137-217)||(13202112-13202192)
chr1 (134-177)||(17615299-17615342)
chr1 (136-174)||(22620115-22620153)
chr1 (145-194)||(23455191-23455241)
chr1 (96-165)||(20866224-20866293)
[»] chr5 (14 HSPs)
chr5 (65-242)||(19218006-19218179)
chr5 (134-233)||(23210142-23210240)
chr5 (134-242)||(20060860-20060967)
chr5 (134-242)||(20064488-20064595)
chr5 (134-194)||(20058706-20058766)
chr5 (136-194)||(17167332-17167390)
chr5 (134-242)||(20713228-20713335)
chr5 (96-194)||(19924027-19924125)
chr5 (96-245)||(23355632-23355780)
chr5 (104-194)||(24878367-24878457)
chr5 (134-233)||(25951315-25951412)
chr5 (96-194)||(19926754-19926852)
chr5 (165-242)||(23379398-23379474)
chr5 (145-215)||(31533030-31533102)
[»] chr6 (12 HSPs)
chr6 (99-242)||(22397579-22397723)
chr6 (77-242)||(17524825-17524987)
chr6 (134-242)||(1177238-1177349)
chr6 (96-191)||(17947925-17948020)
chr6 (134-194)||(16177304-16177364)
chr6 (96-194)||(14762989-14763087)
chr6 (96-194)||(18713712-18713810)
chr6 (138-242)||(15830026-15830129)
chr6 (134-179)||(31126247-31126292)
chr6 (145-215)||(24154157-24154229)
chr6 (145-194)||(13002856-13002906)
chr6 (204-242)||(32784146-32784184)
[»] chr8 (15 HSPs)
chr8 (7-242)||(28371003-28371232)
chr8 (7-242)||(9218043-9218274)
chr8 (96-217)||(9286374-9286495)
chr8 (134-242)||(23540244-23540351)
chr8 (131-217)||(16600591-16600677)
chr8 (165-242)||(10661748-10661825)
chr8 (104-217)||(13110204-13110317)
chr8 (134-177)||(26136199-26136242)
chr8 (131-172)||(10661054-10661095)
chr8 (104-194)||(18672174-18672261)
chr8 (96-194)||(22713666-22713764)
chr8 (145-194)||(23355487-23355537)
chr8 (145-194)||(32352217-32352267)
chr8 (145-194)||(32368878-32368928)
chr8 (145-215)||(41652001-41652073)
[»] chr4 (7 HSPs)
chr4 (58-242)||(9409178-9409359)
chr4 (8-239)||(11361565-11361790)
chr4 (134-194)||(5358040-5358100)
chr4 (134-219)||(16675127-16675213)
chr4 (145-194)||(12424798-12424848)
chr4 (146-194)||(26654146-26654195)
chr4 (145-215)||(24924906-24924978)
[»] scaffold0264 (1 HSPs)
scaffold0264 (92-194)||(20842-20943)
[»] scaffold0002 (1 HSPs)
scaffold0002 (115-194)||(374195-374273)
[»] scaffold0337 (2 HSPs)
scaffold0337 (96-194)||(17224-17322)
scaffold0337 (96-194)||(4549-4647)
[»] scaffold0555 (1 HSPs)
scaffold0555 (134-241)||(5692-5798)
[»] scaffold0142 (1 HSPs)
scaffold0142 (123-219)||(20571-20667)
[»] scaffold0016 (1 HSPs)
scaffold0016 (165-242)||(12991-13067)
[»] scaffold0431 (1 HSPs)
scaffold0431 (145-194)||(5127-5177)
[»] scaffold0024 (1 HSPs)
scaffold0024 (145-194)||(38917-38967)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 3743349 - 3743583
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3743349 cataggttgctttacgaacatgacgagattatgtggtgtctttcgaca-aaaaaagggttttttaacagtaaagtaaaggcattcaagtttgaaattgca 3743447  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggta 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  3743448 gaatcttgaaggaaaaataaagtacaaggcattaaaaataaaggtggttcgacaaatcctttgtatacattttttatgactcttttcttcagcaccggta 3743547  T
Q  207 cttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  3743548 cttcgagtgtttttagaattatgtataggtgatttg 3743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 20145819 - 20146010
Alignment:
Q  44 gtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaa 143  Q
    ||||||||||||||||| |    |||||| || |||||||| ||||| || |||||| |||||||| ||| |||||||  || | |||||||||||||||    
T  20145819 gtctttcgacagaaaaagg----ttttaaaagcaaagtaaatgcatt-aactttaaa-ttgcagaaacttcaaggaaaggtagaatacaatgcattaaaa 20145912  T
Q  144 ataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||   || || |||||||||||| ||||||||||||| || |||||||||    
T  20145913 ataaaggtggttcgacaaatcctttacatacattctttatgactctcttctctcgcgccagtacttcgagtg-ttttagaattatgcatgggtgatttg 20146010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 14987269 - 14987100
Alignment:
Q  68 tttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaag-tacaatgcattaaaaataaaggtggttcgacaaatcct 166  Q
    ||||| || |||||||||||||| ||||||||| ||| |||| ||| ||| ||| |||||  ||||   ||||||||||||||||||||||| ||||| |    
T  14987269 tttaaaagaaaagtaaaggcatt-aagtttaaa-ttggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaaaaatctt 14987172  T
Q  167 ttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgat 239  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||    
T  14987171 ttacatacattctttatgactcttttctctcgcaccggtacttcgagtg-ttttagaattatgtataggtgat 14987100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 15416880 - 15416711
Alignment:
Q  68 tttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaag-tacaatgcattaaaaataaaggtggttcgacaaatcct 166  Q
    ||||| || |||||||||||||| ||||||||| ||| |||| ||| ||| ||| |||||  ||||   ||||||||||||||||||||||| ||||| |    
T  15416880 tttaaaagaaaagtaaaggcatt-aagtttaaa-ttggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaaaaatctt 15416783  T
Q  167 ttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgat 239  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||    
T  15416782 ttacatacattctttatgactcttttctctcgcaccggtacttcgagtg-ttttagaattatgtataggtgat 15416711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 17600538 - 17600729
Alignment:
Q  43 tgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaa 142  Q
    |||||||||||| ||||||||   |||||| || |||||||||| |    || || ||||| || || ||| ||||||| ||||  ||||| ||||||||    
T  17600538 tgtctttcgacaaaaaaaagg---ttttaaaagaaaagtaaaggaa----aggtttaaattccataaacttaaaggaaagataacatacaaagcattaaa 17600630  T
Q  143 aataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||   |  ||||||||||||||| |||||||||| |||||||||||||||    
T  17600631 aataaaggttgttcgacaaatcctttacatacattctttatgactctttcctctcgtgccggtacttcgagtg-ttttagaattctgtataggtgatttg 17600729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 24832460 - 24832545
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttt 219  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||   || ||| |||||||||||||||    
T  24832460 tgcattaaaaataatggtggttcgacaaattctttacatacattctttatgactcttttctcttgcgccgatacttcgagtgtttt 24832545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 2546881 - 2547106
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    |||||||||||||| ||||| || ||||   | ||  |||||||||| |||||||||   |||||| || |||| ||||||||| ||||||||| |||||    
T  2546881 cataggttgctttacgaacaggatgagaccgtatggcgtctttcgacggaaaaaagg---ttttaaaagcaaagaaaaggcatt-aagtttaaa-ttgca 2546975  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggta 206  Q
    ||| ||| |||||||  |||| |||||||     ||||||||||||||  | |||||||||||||| |||| ||||||||| ||||||   |   |||||    
T  2546976 gaaacttaaaggaaaggtaaaatacaatg----taaaataaaggtggtctgccaaatcctttacatccattctttatgacttttttctctcgggtcggta 2547071  T
Q  207 cttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||| |||||||||| | |||||||||||||    
T  2547072 cttcgagtg-ttttagaattctatataggtgatttg 2547106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 4173570 - 4173463
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    ||||||||| |||||  | ||||||||||||||||||||||||| ||||||||||||||||   ||  || ||||||||||| |||||||||| | ||||    
T  4173570 tgcattaaagataaaactagttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcgatacttcgagtg-ttttagaattctctata 4173472  T
Q  234 ggtgatttg 242  Q
    || ||||||    
T  4173471 ggcgatttg 4173463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 5531784 - 5531734
Alignment:
Q  167 ttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtt 217  Q
    ||||||||||||| ||| ||||||||||   ||||||||||||||||||||    
T  5531784 ttacatacattttgtataactcttttctctcgcaccggtacttcgagtgtt 5531734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 41131957 - 41132011
Alignment:
Q  141 aaaataaaggtggttcgacaaatcct-ttacatacattttttatgactcttttct 194  Q
    ||||| ||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  41131957 aaaatgaaggtggttcgacaaatcagattacatacattttgtatgactcttttct 41132011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 26010799 - 26011030
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaa--ttg 104  Q
    |||||||||||| | ||||| |||||||  || || |||||||||||||||||    | ||||||| || |||||||||||||| |||||||| |  |||    
T  26010799 cataggttgcttaatgaacaggacgagaccatatggtgtctttcgacagaaaa----ggtttttaaaagcaaagtaaaggcatt-aagtttaataacttg 26010893  T
Q  105 cagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccgg 204  Q
    ||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||   || ||||    
T  26010894 cagaaacttaaaggaaagataaaatacaatgctttaaaaataaaggtggttcgacaaatcatttacatacattctttatgactctattctctcgcgccgg 26010993  T
Q  205 tacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||| ||||||||||  ||||||||||||||    
T  26010994 tacttcgagtg-ttttagaattcggtataggtgatttg 26011030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 24699313 - 24699086
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    ||||||||| |||| ||||| |||||||   |||||| |||||||||||||||| ||||||  |||  | |||||||||||||| ||||||||| |||||    
T  24699313 cataggttgttttacgaacaggacgagaccgtgtgatatctttcgacagaaaaa-gggtttcataa--gcaaagtaaaggcatt-aagtttaaa-ttgca 24699219  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggta 206  Q
     || ||| |||||||  |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||| ||||||||   || ||||||    
T  24699218 taaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttaaatacattctt--tgattcttttctctcgcgccggta 24699121  T
Q  207 cttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||| |||||||||| |||||||| ||||||    
T  24699120 cttcgagtg-ttttagaattctgtataggggatttg 24699086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 4765892 - 4765782
Alignment:
Q  66 tttttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcc 165  Q
    ||||||| || |||||||||||||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  4765892 tttttaaaagcaaagtaaaggcatt-aagtttaaaattgcataaacttaaaggaaaaataaagtacaatgcattaaaagtaaaggtggttcgacaaatca 4765794  T
Q  166 tttacatacatt 177  Q
    ||||||||||||    
T  4765793 tttacatacatt 4765782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 15686828 - 15687058
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    |||||||||| ||| ||||| |||||||   ||||  || |||||| ||||||| ||   |||||| || |||||||||||||| ||||||||| |||||    
T  15686828 cataggttgcgttacgaacaggacgagaccgtgtggcgtgtttcgatagaaaaaggg---ttttaaaagcaaagtaaaggcatt-aagtttaaa-ttgca 15686922  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggta 206  Q
    ||| ||| ||| |||  |||| |||||||||||||||||||||||||| | | |||||| || |||||||| |||| |||||||||||   ||  |||||    
T  15686923 gaaacttaaagcaaaggtaaaatacaatgcattaaaaataaaggtggtcctaaaaatccatttcatacattctttaagactcttttctctcgcgtcggta 15687022  T
Q  207 cttcgagtgtttttagaattatgtataggtgatttg 242  Q
    |||||||| |||||||||||  ||||||||||||||    
T  15687023 cttcgagtatttttagaattcagtataggtgatttg 15687058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 13428962 - 13428737
Alignment:
Q  8 ataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgcag 107  Q
    ||||||||||||| | ||| |||||||   ||| || ||| |||||||||||  |||||||  || || |||||||| ||||| ||||||||| ||||||    
T  13428962 ataggttgctttatggacaggacgagaccgtgtaatatctatcgacagaaaa--gggtttt--aaaagcaaagtaaatgcatt-aagtttaaa-ttgcag 13428869  T
Q  108 aatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct-tcagcaccggta 206  Q
    ||  || ||||||| ||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||| |||||||||| ||| |  |||||    
T  13428868 aaatttaaaggaaagataaaatacaatgcattaataataaatgtggttcaacaaatcctttacatacattctttattactcttttctctca-cgtcggta 13428770  T
Q  207 cttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||| |||||||||||  |||||||||||||    
T  13428769 cttcgagtg-ttttagaatta--tataggtgatttg 13428737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 29614724 - 29614619
Alignment:
Q  137 attaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggt 236  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |   |||||||||||||||| |||||||||| ||||||     
T  29614724 attaaaaataaaggtggttcgacaaatcctttacatacattatttatgactcttttctcttgtgtcggtacttcgagtgttcttagaattatatataggc 29614625  T
Q  237 gatttg 242  Q
    ||||||    
T  29614624 gatttg 29614619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 4769742 - 4769913
Alignment:
Q  68 tttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaa-aataaagtacaatgcattaaaaataaaggtggttcgacaaatcct 166  Q
    ||||| || |||||||||||||| ||||||||| || || || ||| ||||||| |||||| |||||||||||| ||||||||||||||||| |||| |     
T  4769742 tttaaaagcaaagtaaaggcatt-aagtttaaattt-cataaacttaaaggaaagaataaa-tacaatgcattagaaataaaggtggttcgaaaaattcg 4769838  T
Q  167 ttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||| ||||||||||||||||   || | |||| |||||||| |||||||||||||||||| |||||||    
T  4769839 ttacatacattctttatgactcttttctcttgcgctggtatttcgagtg-ttttagaattatgtatagatgatttg 4769913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 23378484 - 23378634
Alignment:
Q  95 tttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttc-gacaaatcctttacatacattttttatgactcttttc 193  Q
    |||||||||| |||| ||| ||||||| ||||| | || |||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||    
T  23378484 tttaaaattgtagaaacttaaaggaaagataaattgcattgcattaaaaataaaggtggttcaaacaaatcctttacatacattatgtatgactcttttc 23378583  T
Q  194 ttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttgtga 245  Q
    |   || ||| ||||||||||  |||||||||| |||||| |||||||||||    
T  23378584 tctcgcgccgatacttcgagt-attttagaattttgtataagtgatttgtga 23378634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 4832771 - 4832541
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    |||||||| ||||| ||||| |||||||   ||||| ||||||||| |||||||||||||||| ||  | || |||||| |||| ||||||||| |||||    
T  4832771 cataggtttctttacgaacaagacgagacagtgtgacgtctttcgaaagaaaaaagggtttttaaa--gcaaggtaaagacatt-aagtttaaa-ttgca 4832676  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct-tcagcaccggt 205  Q
     || ||  |||||||| |||| |||||||||||||| ||||||||||| |  || |||||||| ||| ||| ||| |||||||||||| ||| ||||  |    
T  4832675 taaactcaaaggaaaattaaaatacaatgcattaaatataaaggtggtccagcagatcctttaaatatattctttgtgactcttttctctca-caccaat 4832577  T
Q  206 acttcgagtgtttttagaattatgtataggtgatttg 242  Q
     ||||||||| |||||||||| |||||||||||||||    
T  4832576 gcttcgagtg-ttttagaattctgtataggtgatttg 4832541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 9033613 - 9033512
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||  ||||||   || ||| ||||||||||||||| | |||| ||||||    
T  9033613 tgcattaaaaataaaggtggtttgacaaatcctttacatacattctttgtgaccattttctcttgcgccgatacttcgagtgttttgaaaattctgtata 9033514  T
Q  234 gg 235  Q
    ||    
T  9033513 gg 9033512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 16243069 - 16242984
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttt 219  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||   ||   |||||||||||||||||    
T  16243069 tgcattaaaaataaaagtggttcgacaaatgctttacatacattctttatgactcttttctctcgcgttggtacttcgagtgtttt 16242984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 7148790 - 7148850
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  7148790 tgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttatgactcttttct 7148850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 27304547 - 27304456
Alignment:
Q  103 tgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    ||||||| ||| ||| ||| ||||| | || ||||||||||||||| |||||| ||||||| || |||||||||||| ||| | ||||||||    
T  27304547 tgcagaaacttaaagaaaatataaattgcattgcattaaaaataaaagtggtttgacaaattctatacatacattttgtataattcttttct 27304456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 8737277 - 8737234
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacatt 177  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||    
T  8737277 tgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 8737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 9089515 - 9089472
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacatt 177  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||    
T  9089515 tgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 9089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 26650808 - 26651038
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    ||||||||| |||| |||||||||||||   ||||   ||||||||||||||||||||||||  || || ||||||||| |||  ||||||||| |||||    
T  26650808 cataggttgttttacgaacatgacgagaccgtgtggcttctttcgacagaaaaaagggtttt--aaaagcaaagtaaagacatg-aagtttaaa-ttgca 26650903  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggta 206  Q
    ||| ||| |||||||  |||| ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||  ||||     
T  26650904 gaaacttaaaggaaaggtaaaatacaatggattataaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtg 26651003  T
Q  207 cttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||| |||||||||| |||||||||||||||    
T  26651004 cttcgagtg-ttttagaattctgtataggtgatttg 26651038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 17402692 - 17402921
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    |||||||||||||| ||||| |||| |||  | ||||||||||| ||| ||||||||   |||||| || |||||||||||| | ||||||||| |||||    
T  17402692 cataggttgctttacgaacaagacgggatcgtatgatgtctttcaacaaaaaaaagg---ttttaaaagcaaagtaaaggcaat-aagtttaaa-ttgca 17402786  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggta 206  Q
    ||| ||| ||||||| ||||| |||||||||||||||||||||||||||  |||||||||||||||||||| ||||| ||| ||||||   |  ||||||    
T  17402787 gaaacttaaaggaaatataaaatacaatgcattaaaaataaaggtggttatacaaatcctttacatacattctttataacttttttctctcgtgccggta 17402886  T
Q  207 cttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||| ||||| |||||||||| | |||||||||||||    
T  17402887 cttagagtg-ttttagaattctatataggtgatttg 17402921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 18929262 - 18929434
Alignment:
Q  67 ttttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcct 166  Q
    |||||| || |||||||||||||| ||||||||| |||||||| ||| |||||||  |||| |||||||||||||||||||||||||||||| ||||| |    
T  18929262 ttttaaaagcaaagtaaaggcatt-aagtttaaa-ttgcagaaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgataaatctt 18929359  T
Q  167 ttacatacattttttatgactcttttct-tcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||| ||||||||| | |||| ||| | ||||||||||||||| |||||||||| | |||||||||||||    
T  18929360 ttacatacattctttatgactatcttctctca-cgccggtacttcgagtg-ttttagaattctatataggtgatttg 18929434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 242
Target Start/End: Complemental strand, 25520594 - 25520422
Alignment:
Q  67 ttttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcct 166  Q
    |||||| || |||||||||||||| ||||| ||||||||||||  || ||| ||| ||||| |||| ||||||||||||||||| ||||||||||| |||    
T  25520594 ttttaaaagcaaagtaaaggcatt-aagtt-aaaattgcagaaagttaaagaaaagataaactacattgcattaaaaataaaggaggttcgacaaaacct 25520497  T
Q  167 ttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||| | ||||||||||||||   || |||  |||||||||| ||||| |||| |||||||||||||||    
T  25520496 ttacatacattatgtatgactcttttctctcgcgccgtcacttcgagtg-ttttataattctgtataggtgatttg 25520422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 24543873 - 24543994
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttctt 195  Q
    ||||||||||| || |||| |||||||||||| | || ||||||||||||||||||||||| | |||||||||||||| ||| | ||| | ||||||||     
T  24543873 ttaaaattgcaaaaacttgtaggaaaaataaattgcattgcattaaaaataaaggtggttccagaaatcctttacatatattatgtataaatcttttctc 24543972  T
Q  196 cagcaccggtacttcgagtgtt 217  Q
      || ||| |||||||||||||    
T  24543973 tcgcgccgatacttcgagtgtt 24543994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 31404206 - 31404078
Alignment:
Q  91 caagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattttttatgactct 189  Q
    |||||||||||| |||||| ||| ||| |||  |||| | || ||||||||||  ||||||||||||||||||| ||| ||||||||| | ||| |||||    
T  31404206 caagtttaaaat-gcagaaacttaaagaaaaggtaaattgcattgcattaaaataaaaggtggttcgacaaatcattttacatacattctgtataactct 31404108  T
Q  190 tttcttcagcaccggtacttcgagtgtttt 219  Q
    |||||   || |||||||||||||||||||    
T  31404107 tttctctcgcgccggtacttcgagtgtttt 31404078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 17676599 - 17676671
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttcttcag-caccggtacttcgagtg 215  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||| || | | |||||||||||||    
T  17676599 taaaggtggttcgacaaatcagattacatacattttgtatgactcttttctttagacgctggtacttcgagtg 17676671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 28760724 - 28760652
Alignment:
Q  145 taaaggtggttcgacaaatcc-tttacatacattttttatgactcttttcttcag-caccggtacttcgagtg 215  Q
    ||||||||||||||||||||  |||||||||||| | ||||||||||||||  || | |||||||||||||||    
T  28760724 taaaggtggttcgacaaatcagtttacatacattctatatgactcttttctctagacgccggtacttcgagtg 28760652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 17636741 - 17636792
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttctt 195  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||||||||    
T  17636741 taaaggtggttcgacaaatcagattacatacattttgtatgactcttttctt 17636792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 11014085 - 11013854
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    ||||||||| |||| ||||| |||||||   | |||| |||||| | ||||||| ||  ||||||| || |||||||||||||| |||||||||||| |     
T  11014085 cataggttgttttacgaacaggacgagaccgtatgatatctttcaatagaaaaaggg--tttttaaaagcaaagtaaaggcatt-aagtttaaaattcct 11013989  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct-tcagcaccggt 205  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||   | |||    
T  11013988 gaaacttaaaggaaaaataaagtacaatgcattaaaaataaaggtggctcgacaaatcctttacatatattctttatgactcttttctctca-agctggt 11013890  T
Q  206 acttcgagtgtttttagaattatgtataggtgatttg 242  Q
    | |||||||| ||||| |||| |||||||||||||||    
T  11013889 atttcgagtg-ttttaaaattttgtataggtgatttg 11013854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 33103019 - 33103163
Alignment:
Q  97 taaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct-t 195  Q
    ||||||||||||| ||| ||||||| ||||| | || ||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||||| |    
T  33103019 taaaattgcagaaacttaaaggaaagataaattgcattgcattaaaaataaatgtagttcgacaaatcctttacatacattctatatgactcttttctct 33103118  T
Q  196 cagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    || |  |||||||||||||| ||||||||||||||||||||||||||    
T  33103119 ca-cgtcggtacttcgagtg-ttttagaattatgtataggtgatttg 33103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 22608000 - 22607903
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    ||||||||||||||| || ||||||| ||||| |||| |||||||||||||||||||||||  || |||||||||||||||||||||| ||||||||||    
T  22608000 ttaaaattgcagaat-ttaaaggaaagataaactacattgcattaaaaataaaggtggttcagcagatcctttacatacattttttataactcttttct 22607903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 20150563 - 20150459
Alignment:
Q  137 attaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggt 236  Q
    ||||||||||||||||||| |||||||||||| ||| |||||| ||||||| ||||||   ||  |||||||||||||| || |||||||||||||||||    
T  20150563 attaaaaataaaggtggtttgacaaatcctttgcatgcattttgtatgacttttttctctcgcgtcggtacttcgagtg-ttgtagaattatgtataggt 20150465  T
Q  237 gatttg 242  Q
    ||||||    
T  20150464 gatttg 20150459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 20146222 - 20146328
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    |||||||||||||||| |||| | | |||||||||||||||| | ||||||||||||||||   |||||||||||| ||||| |||||||||| ||||||    
T  20146222 tgcattaaaaataaagatggtccaaaaaatcctttacataca-tctttatgactcttttctctcgcaccggtactttgagtg-ttttagaattttgtata 20146319  T
Q  234 ggtgatttg 242  Q
    |||||||||    
T  20146320 ggtgatttg 20146328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 36571786 - 36571726
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  36571786 tgcattaaaaataaaggtggttcgacaaatcctttacatacattatgtataactcttttct 36571726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 13202192 - 13202112
Alignment:
Q  137 attaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||   || |||||| ||||||||||    
T  13202192 attaaaaataaaggtggttcgacaaatcctttacatacattatgtataactattttctctcgcgccggtatttcgagtgtt 13202112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 17615299 - 17615342
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacatt 177  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  17615299 tgcattcaaaataaaggttgttcgacaaatcctttacatacatt 17615342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 22620153 - 22620115
Alignment:
Q  136 cattaaaaataaaggtggttcgacaaatcctttacatac 174  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  22620153 cattaaaaataaaggtggttcgacaaatcttttacatac 22620115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 23455191 - 23455241
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttct 194  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  23455191 taaaggtggttcgacaaatcatattacatacattttgtatgactcttttct 23455241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 20866224 - 20866293
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcc 165  Q
    |||||||||||||| ||| ||| ||| ||||| |    ||||||||||||||||||||||||||||||||    
T  20866224 ttaaaattgcagaaacttaaagaaaagataaattgtgttgcattaaaaataaaggtggttcgacaaatcc 20866293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 242
Target Start/End: Complemental strand, 19218179 - 19218006
Alignment:
Q  65 ttttttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatc 164  Q
    |||||||| || |||||||||||||| ||||||||| ||| |||| ||| |||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  19218179 ttttttaaaagcaaagtaaaggcatt-aagtttaaa-ttgtagaaacttaaaggaaatgtaaaatacaatgcattaaaaataaaggtggttcgacaaatc 19218082  T
Q  165 ctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||||| |||||| |||||||||   || ||||||||| ||||| |||||||||| |||||||||||||||    
T  19218081 ctttacatacattctttatggctcttttctctcgcgccggtactttgagtg-ttttagaatt-tgtataggtgatttg 19218006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 23210240 - 23210142
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||   || ||||||||||||||| |||||||||||||||||    
T  23210240 tgcattaaaaataaaagtggttcgacaaatcctttacatacattctttaagactcttttctcttgcgccggtacttcgagtg-ttttagaattatgtata 23210142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 20060860 - 20060967
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   || |||||| ||| | || |||||||||| ||||||    
T  20060860 tgcattaaaaataaaggtggttcgacaaatcctttacatacattgtttatgactcttttctcttgcgccggtagttcaaatg-ttttagaattctgtata 20060958  T
Q  234 ggtgatttg 242  Q
    || ||||||    
T  20060959 ggcgatttg 20060967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 20064595 - 20064488
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||   ||||||||||||  |||| |||||||||| ||||||    
T  20064595 tgcattaaaaataaaggtggttcaacaaatcatttacatacattttttataactcttttctcttgcaccggtactttcagtg-ttttagaattctgtata 20064497  T
Q  234 ggtgatttg 242  Q
    || ||||||    
T  20064496 ggcgatttg 20064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 20058766 - 20058706
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  20058766 tgcattaaaaataaaggtggttcgacaaattctttacatacattctttatgactcttttct 20058706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 17167390 - 17167332
Alignment:
Q  136 cattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17167390 cattaaaaataaaggtggttcgacaaatcctttacatacattttgtattactcttttct 17167332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 20713228 - 20713335
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    |||||||||||||||||| |||| |||||||  ||||||||||| ||||||||||||||||   ||| ||||| |||||||| |||||||||| ||||||    
T  20713228 tgcattaaaaataaaggttgttcaacaaatctgttacatacattctttatgactcttttctcttgcatcggtatttcgagtg-ttttagaattctgtata 20713326  T
Q  234 ggtgatttg 242  Q
     | ||||||    
T  20713327 tgcgatttg 20713335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 19924125 - 19924027
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| |||| || ||| ||| ||| ||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||||    
T  19924125 ttaaaagtgcataaacttaaagaaaagataaattacattgcattaaaaataaaggtggttcgacaaatcttttatatacattctgtataactcttttct 19924027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 23355632 - 23355780
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttctt 195  Q
    |||||||||||||| | | ||| ||| ||||| | || |||||||||| ||||||||||  || ||||| |||||||| ||||| ||||||| |||||      
T  23355632 ttaaaattgcagaaacataaagaaaagataaattgcattgcattaaaagtaaaggtggtctgaaaaatcatttacatatattttgtatgactattttccc 23355731  T
Q  196 cagcaccggtacttcgagtgtttttagaattatgtataggtgatttgtga 245  Q
     | | |||||||||| |||| || ||||||| ||||||||| ||||||||    
T  23355732 taacgccggtacttcaagtg-ttctagaattctgtataggtaatttgtga 23355780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 24878367 - 24878457
Alignment:
Q  104 gcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| ||| ||| ||| ||||| | || |||||||||||||||||||||| ||||||||||||||||| |||   ||| ||||||||||    
T  24878367 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggtttgacaaatcctttacataaattacgtataactcttttct 24878457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 25951315 - 25951412
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct-tcagcaccggtacttcgagtgtttttagaattatgtat 232  Q
    |||||||| | ||||  |||||||||||||| |||||||||||| |||||||||||||||| || |   |||||||| ||||| ||||||||||||||||    
T  25951315 tgcattaagagtaaaattggttcgacaaatcttttacatacattctttatgactcttttctctctg--tcggtactttgagtg-ttttagaattatgtat 25951411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 19926852 - 19926754
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| |||| || ||| ||| ||| ||||| | || ||||||||||||||||||||||||||||||| ||||  |||||| | ||| ||| ||||||    
T  19926852 ttaaaagtgcataaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgacaaatcttttatttacattctgtataactattttct 19926754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 23379474 - 23379398
Alignment:
Q  165 ctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||||| ||||||||||||||||   || |  |||||||||||| |||||||||| || ||||||||||||    
T  23379474 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtg-ttttagaattctgcataggtgatttg 23379398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 31533102 - 31533030
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttcttcag-caccggtacttcgagtg 215  Q
    ||||||||||||||||||||   ||||||||||| | ||||||||||||||| || | |||||||||||||||    
T  31533102 taaaggtggttcgacaaatcagattacatacattctctatgactcttttctttagacgccggtacttcgagtg 31533030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 22397723 - 22397579
Alignment:
Q  99 aaattgcagaatcttgaa-ggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttca 197  Q
    ||||||||||| ||| || |||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||       
T  22397723 aaattgcagaaacttaaaaggaaaggtaaaatacaatgcattaaaaataaaggttgttcgacaaatcctttacatacattctttatgactattttctctc 22397624  T
Q  198 gcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    || |||||||||||||||||||||||||| |||||||||||||||    
T  22397623 gcgccggtacttcgagtgtttttagaattctgtataggtgatttg 22397579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 17524825 - 17524987
Alignment:
Q  77 aaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacat 176  Q
    |||||||||| ||| || |||||||||| |||| ||| ||| ||||||||| || |||||||||||||||||||| || |||| ||||||||| ||||||    
T  17524825 aaagtaaaggaatt-aattttaaaattgtagaaacttaaagaaaaaataaattataatgcattaaaaataaaggttgtccgac-aatcctttaaatacat 17524922  T
Q  177 tttttatgactcttttct-tcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    | |||||||||||||||| ||| | || | |||||||||| ||||||||||||||||||||||||||    
T  17524923 tctttatgactcttttctctca-cgccagcacttcgagtg-ttttagaattatgtataggtgatttg 17524987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 1177349 - 1177238
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatac----attttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatg 229  Q
    |||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||   || |  |||||||||||| |||||||||| ||    
T  1177349 tgcattaaaaataaaggtggttcgacaaatcctttacatacatgtattctttatgactcttttctctcgcgctagtacttcgagtg-ttttagaattctg 1177251  T
Q  230 tataggtgatttg 242  Q
    ||||| |||||||    
T  1177250 tatagatgatttg 1177238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 17948020 - 17947925
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttt 191  Q
    |||||| |||| || ||| ||||||| ||||| | || || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  17948020 ttaaaaatgcataaacttaaaggaaagataaattgcattgaattaaaaataaaggtggttcgacaaatcctttacatacattttatataactcttt 17947925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 16177304 - 16177364
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  16177304 tgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttatgactcttttct 16177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 14763087 - 14762989
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| ||||||| ||| ||| ||| ||||| | || ||||||||||||||||||||||||| || ||||||||||||||| | ||| ||||||||||    
T  14763087 ttaaaagtgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgagaactcctttacatacattctgtataactcttttct 14762989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 18713712 - 18713810
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| ||||||| ||| ||| ||  ||||| | || ||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  18713712 ttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactcttttct 18713810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 15830026 - 15830129
Alignment:
Q  138 ttaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct-tcagcaccggtacttcgagtgtttttagaattatgtataggt 236  Q
    ||||||||||| ||| ||||||||||| |||||||||||| |||||||||||||||| ||| ||| | ||||| ||||| |||||||||| ||||||||     
T  15830026 ttaaaaataaaagtgattcgacaaatcttttacatacattatttatgactcttttctctca-cactgatactttgagtg-ttttagaattctgtataggc 15830123  T
Q  237 gatttg 242  Q
    ||||||    
T  15830124 gatttg 15830129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 31126292 - 31126247
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacatttt 179  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  31126292 tgcattataaataaaggtggttcggcaaatcctttacatacatttt 31126247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 24154229 - 24154157
Alignment:
Q  145 taaaggtggttcgacaaatcc-tttacatacattttttatgactcttttcttcag-caccggtacttcgagtg 215  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||| || |  ||||||||||||||    
T  24154229 taaaggtggttcgacaaatcagtttacatacattttgtatgactcttttctttagacgtcggtacttcgagtg 24154157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 13002906 - 13002856
Alignment:
Q  145 taaaggtggttcgacaaatcc-tttacatacattttttatgactcttttct 194  Q
    ||||||||||||||||||||  |||||||||||| | ||||||||||||||    
T  13002906 taaaggtggttcgacaaatcagtttacatacattctgtatgactcttttct 13002856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 32784146 - 32784184
Alignment:
Q  204 gtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  32784146 gtacttcgagtgttcttagaattatgtataggcgatttg 32784184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 28371003 - 28371232
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgca 106  Q
    |||||||||||| | |||   ||||| ||| ||||  ||||||||||||||||| ||   |||||| || |||||||| ||||| ||||||||| |||||    
T  28371003 cataggttgcttaacgaatgggacgaaattgtgtggcgtctttcgacagaaaaatgg---ttttaaaagcaaagtaaatgcatt-aagtttaaa-ttgca 28371097  T
Q  107 gaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttc-ttcagcaccggt 205  Q
    ||| ||| |||||| | |||| |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||  ||| ||| |||    
T  28371098 gaaacttaaaggaacagtaaaatacaatgcattaaaaataaaggaggttcgacaaatactttacatacattctttatgacttttttcactca-cactggt 28371196  T
Q  206 acttcgagtgtttttagaattatgtataggtgatttg 242  Q
    |||||||||| |||||||||| | |||||||||||||    
T  28371197 acttcgagtg-ttttagaattttatataggtgatttg 28371232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 9218043 - 9218274
Alignment:
Q  7 cataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagg-gttttttaacagtaaagtaaaggcattcaagtttaaaattgc 105  Q
    |||||||||||||| ||||| || ||||   | ||| ||||||||||||||||||   | ||||||| || ||||||||  |||| ||||||||| ||||    
T  9218043 cataggttgctttacgaacaagaggagaccgtatgacgtctttcgacagaaaaaaaaaggtttttaaaagcaaagtaaaaacatt-aagtttaaa-ttgc 9218140  T
Q  106 agaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggt 205  Q
    |||| ||| ||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||| || |||   ||  ||||    
T  9218141 agaaacttaaaggaaagataaaatacaatgcattaaaaataaagatggttcgacaaatcatttacatacattctgtatgacttttctctc--gcgtcggt 9218238  T
Q  206 acttcgagtgtttttagaattatgtataggtgatttg 242  Q
    |||||||||| |||||||||| |||||| ||||||||    
T  9218239 acttcgagtg-ttttagaattctgtatatgtgatttg 9218274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 9286495 - 9286374
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttctt 195  Q
    |||||| ||||||| ||| ||  ||| ||||| | || |||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||     
T  9286495 ttaaaagtgcagaaacttaaaaaaaagataaattgcattgcattaaaaataaaggtagttcgacaaatcctttacatacattttgtataactattttctc 9286396  T
Q  196 cagcaccggtacttcgagtgtt 217  Q
      ||||||||||||||||||||    
T  9286395 tcgcaccggtacttcgagtgtt 9286374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 23540351 - 23540244
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||   |  ||||||||| ||||  |||||||||| ||||||    
T  23540351 tgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttatgattcttttctcttgagccggtactttgagt-attttagaattctgtata 23540253  T
Q  234 ggtgatttg 242  Q
    |||||||||    
T  23540252 ggtgatttg 23540244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 16600591 - 16600677
Alignment:
Q  131 caatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtt 217  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||||| ||||   || |||||||||||||||||    
T  16600591 caatgcattaaaaataaatgtggttcgacaaatcctttacgtacattatgtataactctattctctcgcgccggtacttcgagtgtt 16600677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 10661748 - 10661825
Alignment:
Q  165 ctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||||| |||||||||||||| |   |||||||||| | ||| |||||||||||| |||||||||||||||    
T  10661748 ctttacatacattctttatgactcttttttatcgcaccggtacattgagagtttttagaattctgtataggtgatttg 10661825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 13110204 - 13110317
Alignment:
Q  104 gcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccg 203  Q
    |||||| ||| ||| ||| ||||| | || ||||||||||||||||||||||| ||||||| | |||||| ||||| ||| ||||||||||    | |||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcatatacatatattttgtataactcttttctctctcgccg 13110303  T
Q  204 gtacttcgagtgtt 217  Q
    ||||||||||||||    
T  13110304 gtacttcgagtgtt 13110317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 26136242 - 26136199
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacatt 177  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  26136242 tgcattaaaaataaaggtggtccgacaaatcctttacatacatt 26136199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 10661054 - 10661095
Alignment:
Q  131 caatgcattaaaaataaaggtggttcgacaaatcctttacat 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  10661054 caatgcattcaaaataaaggtggttcgacaaatcctttacat 10661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 18672261 - 18672174
Alignment:
Q  104 gcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| ||| ||| ||| ||||| |||| ||||||||||||||||||   || ||||||| |||||||||||||| ||| ||||||||||    
T  18672261 gcagaaacttcaagaaaagataaattacattgcattaaaaataaaggt---tcaacaaatcatttacatacattttgtataactcttttct 18672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 22713764 - 22713666
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| || |||| ||| ||| ||| ||||  |||| |||||||||||||||||||||| ||||||| ||||||||| ||| | ||| | ||||||||    
T  22713764 ttaaaagtgtagaaacttaaagaaaagataatttacattgcattaaaaataaaggtggtttgacaaattctttacatatattctatataaatcttttct 22713666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 23355487 - 23355537
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttct 194  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  23355487 taaaggtggttcgacaaatcagattacatacattttgtatgactcttttct 23355537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 32352217 - 32352267
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttct 194  Q
    |||| ||||||||||||||| | ||||||||||||| ||||||||||||||    
T  32352217 taaaagtggttcgacaaatcatattacatacattttgtatgactcttttct 32352267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 32368878 - 32368928
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttct 194  Q
    |||| ||||||||||||||| | ||||||||||||| ||||||||||||||    
T  32368878 taaaagtggttcgacaaatcatattacatacattttgtatgactcttttct 32368928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 41652073 - 41652001
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttcttcag-caccggtacttcgagtg 215  Q
    ||||||||||||||||||||   ||||||||||| | ||||||||||||||  || ||| |||||||||||||    
T  41652073 taaaggtggttcgacaaatcaaattacatacattctgtatgactcttttctctagacactggtacttcgagtg 41652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 9409359 - 9409178
Alignment:
Q  58 aaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcg 157  Q
    ||||||| |||| || || |||||||| | ||| ||||||||| ||||| || ||| ||||||| ||||| |||||||||||||||||||||||||||||    
T  9409359 aaaaggggttttaaaaagcaaagtaaaagtatt-aagtttaaa-ttgcataaacttaaaggaaagataaaatacaatgcattaaaaataaaggtggttcg 9409262  T
Q  158 acaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    |||||||||||||||||||| ||||| ||| ||||||   || ||||||||||||||| |||||||||| | |||| ||||||||    
T  9409261 acaaatcctttacatacattctttataacttttttctcttgcgccggtacttcgagtg-ttttagaattctatataagtgatttg 9409178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 11361565 - 11361790
Alignment:
Q  8 ataggttgctttaggaacatgacgagattatgtgatgtctttcgacagaaaaaagggttttttaacagtaaagtaaaggcattcaagtttaaaattgcag 107  Q
    ||||||||||||  ||||| |||||||   |||| ||||||| ||||| ||||| |   |||||| || |||||||||||||| ||||||||| ||||||    
T  11361565 ataggttgctttgcgaacaggacgagaccgtgtggtgtcttttgacaggaaaaaag---ttttaaaagcaaagtaaaggcatt-aagtttaaa-ttgcag 11361659  T
Q  108 aatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtac 207  Q
    ||  || || ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||    ||  |||||     
T  11361660 aaatttaaatgaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttgtaactcttttccctcgcgtcggtaa 11361759  T
Q  208 ttcgagtgtttttagaattatgtataggtgat 239  Q
     ||||||| |||||||||| ||||||||||||    
T  11361760 gtcgagtg-ttttagaattctgtataggtgat 11361790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 5358040 - 5358100
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||    
T  5358040 tgcattaaaaataaaggtagttcgacaaatcatttacatacattatgtatgactcttttct 5358100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 16675127 - 16675213
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatccttt-acatacattttttatgactcttttcttcagcaccggtacttcgagtgtttt 219  Q
    |||||| |||||||| ||||||||||||||| ||| ||||||||| | ||| ||||| ||||   ||||||||||||||||||||||    
T  16675127 tgcatttaaaataaaagtggttcgacaaatcattttacatacattctgtataactctcttctctcgcaccggtacttcgagtgtttt 16675213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 12424798 - 12424848
Alignment:
Q  145 taaaggtggttcgacaaatcc-tttacatacattttttatgactcttttct 194  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||||||    
T  12424798 taaaggtggttcgacaaattggtttacatacattttgtatgactcttttct 12424848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 26654195 - 26654146
Alignment:
Q  146 aaaggtggttcgacaaatcct-ttacatacattttttatgactcttttct 194  Q
    ||||||||||||||||||| | ||||||||||| | ||||||||||||||    
T  26654195 aaaggtggttcgacaaatcatattacatacattatgtatgactcttttct 26654146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 24924906 - 24924978
Alignment:
Q  145 taaaggtggttcgacaaatc-ctttacatacattttttatgactcttttct-tcagcaccggtacttcgagtg 215  Q
    ||||||||||||||||||||   ||||||||||| | |||||||||||||| | | | |||||||||||||||    
T  24924906 taaaggtggttcgacaaatcagattacatacattatgtatgactcttttctctaaacgccggtacttcgagtg 24924978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 20842 - 20943
Alignment:
Q  92 aagtttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttt 191  Q
    ||||||||||| |||||| ||| ||||||| | ||| | ||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  20842 aagtttaaaat-gcagaaacttaaaggaaagaaaaaatgcaatgcatttaaaataaaggtggttccacaaattctttacatacattctttatgactcttt 20940  T
Q  192 tct 194  Q
    |||    
T  20941 tct 20943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 374273 - 374195
Alignment:
Q  115 aaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    ||||||| ||||| | || |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  374273 aaggaaagataaattgcattgcattaaaaataaaggtggttcgacaaatactttacatacattttgtat-actcttttct 374195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 17224 - 17322
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| ||||||| ||| ||| ||  ||||| | || ||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  17224 ttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactcttttct 17322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 4549 - 4647
Alignment:
Q  96 ttaaaattgcagaatcttgaaggaaaaataaagtacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttct 194  Q
    |||||| ||||||| ||| ||| || |||||| | || ||| ||||||||||||||||||| ||||||| |||| || |||| | ||| ||||||||||    
T  4549 ttaaaagtgcagaaacttaaagaaataataaattgcattgctttaaaaataaaggtggttctacaaatcttttaaatgcattctgtataactcttttct 4647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 5798 - 5692
Alignment:
Q  134 tgcattaaaaataaaggtggttcgacaaatcctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtata 233  Q
    ||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||| |   |   ||||||||| || | |||||||||| ||||||    
T  5798 tgcattaaaaataaaggtggtccgacaaattctttacatacattccttatgactcttttttctcgtgtcggtacttcaagcg-ttttagaattctgtata 5700  T
Q  234 ggtgattt 241  Q
    ||||||||    
T  5699 ggtgattt 5692  T

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Target: scaffold0142 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 20571 - 20667
Alignment:
Q  123 ataaagtacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattttttatgactcttttcttcagcaccggtacttcgagtgtttt 219  Q
    ||||| |||| |||||||||| ||||||||||| |||||||  ||| ||||||||| | ||| ||||||||||   || |||||||||||||||||||    
T  20571 ataaattacattgcattaaaa-taaaggtggtttgacaaattatttcacatacattatgtataactcttttctctcgcgccggtacttcgagtgtttt 20667  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 12991 - 13067
Alignment:
Q  165 ctttacatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtgatttg 242  Q
    ||||||||||||| ||||||||||||||||   || |  |||||||||||| |||||||||| || ||||||||||||    
T  12991 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtg-ttttagaattctgcataggtgatttg 13067  T

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Target: scaffold0431 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 5177 - 5127
Alignment:
Q  145 taaaggtggttcgacaaatcc-tttacatacattttttatgactcttttct 194  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||||||    
T  5177 taaaggtggttcgacaaattggtttacatacattttgtatgactcttttct 5127  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 38967 - 38917
Alignment:
Q  145 taaaggtggttcgacaaatcct-ttacatacattttttatgactcttttct 194  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  38967 taaaggtggttcgacaaatcagattacatacattttatatgactcttttct 38917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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