View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_3 (Length: 386)
Name: NF9588_low_3
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 35753984 - 35753624
Alignment:
| Q |
20 |
tagatactacacaattgtcg-gaccattcaaagcagtgtcaaaatgcaatagttgttgccttaatcaacttcatacgatgaatacctatgttttaggtag |
118 |
Q |
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| T |
35753984 |
tagatactacacaattgtcttgaccattcaaagcagtgtcaaaatgcaatagttgttgccttaatcaacttcatacgatgaatacctatgttttaggtag |
35753885 |
T |
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| Q |
119 |
gtacaccaacatgctatgagtttgtaagggtcaatttagtttgatacggttcatacttgcaaattttgcaatgttaaacatcttatttttgaagttgatc |
218 |
Q |
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| T |
35753884 |
gtacaccaacatgctatgagtttgtaagggtcaatttagtttgatatggttcatacttgcaaattttgcaatgttaaacatcttatttttgaagttgatc |
35753785 |
T |
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| Q |
219 |
ttggttatacgagatcacacgcaccaatgttgttaaacattacacaagacttgtctcgtatggaacagacatcacaaaaaatacgcattaaatcctttat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
35753784 |
ttggttatacgagatcacacgcaccaatgttgttaaacattacacaagacttgtctcgtatggaacggacatcataaaaaatacgcattaaatcctttat |
35753685 |
T |
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| Q |
319 |
tttgtacgtaattaataannnnnnnagttttcaacaccacaattctatgttgtctctgctt |
379 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
35753684 |
tttgtacgtaattaataatttttttagttttcaacaccacaattctatgttgtctttgctt |
35753624 |
T |
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