View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_4 (Length: 379)
Name: NF9588_low_4
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 3679174 - 3679519
Alignment:
| Q |
15 |
caaaggataatgatatttgtacgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtg |
114 |
Q |
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| T |
3679174 |
caaaggataatgatatttgtacgaagagtattcataaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtg |
3679273 |
T |
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| Q |
115 |
atttccgctcattcctgaactatacactacttcttcttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgata |
214 |
Q |
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| T |
3679274 |
atttccgctcattcctgaactatacactacttcttcttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgata |
3679373 |
T |
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| Q |
215 |
aatagcagtactagaaatgaaaatatgacagctatggtcaattatgtttttatgaattctcatttatgtcactaaaactgagaattgagtaataagtcat |
314 |
Q |
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| T |
3679374 |
aatagcagtactagaaatgaaaatatgacagttatggtcaattatgtttttatgaattctcatttatgtcactaaaactgagaattgagtaataagtcat |
3679473 |
T |
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| Q |
315 |
agatacagataaagaaagcttccaatccaagtagatacagataaag |
360 |
Q |
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| T |
3679474 |
agatacagataaagaaagcttccaatccaagtagatacagataaag |
3679519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 3693705 - 3693925
Alignment:
| Q |
16 |
aaaggataatgatatttgtacgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtga |
115 |
Q |
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||||||||||||||||| |||||||| |||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
3693705 |
aaaggataatgatatttctacgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtga |
3693804 |
T |
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| Q |
116 |
tttccgctcattcctgaactatacactacttctt-cttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgata |
214 |
Q |
| |
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||||||||||||||||||| ||||||| |||||| ||| ||||||||||| || ||||||||||||||||||| |||||||| |||| |||||| |
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| T |
3693805 |
tttccgctcattcctgaaccatacactgcttcttcctttataattacaac----ac---gtatcgattcgggaagatcatgatgaggtgtgtttttgata |
3693897 |
T |
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| Q |
215 |
aatagcagtactagaaatgaaaatatgac |
243 |
Q |
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| T |
3693898 |
aacaacagtactagaaat-aaaatatgac |
3693925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 3685938 - 3686165
Alignment:
| Q |
16 |
aaaggataatgatatttgta-cgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtg |
114 |
Q |
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|||||||||||||||||| | |||||| ||| |||| |||||||| |||| |||| |||||| |||||||||||| ||| |||||||||||| ||||| |
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| T |
3685938 |
aaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttttaacacatacacactgtg |
3686036 |
T |
|
| Q |
115 |
atttccgctcattcctgaactatacactacttctt-cttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgat |
213 |
Q |
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| T |
3686037 |
atttccgctcattcatgaactatacacaacttcttcctttataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgat |
3686129 |
T |
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| Q |
214 |
aaatagcagtactagaaatgaaaatatgacagctatg |
250 |
Q |
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|||||||||||||||||| |||||||||||| |||| |
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| T |
3686130 |
aaatagcagtactagaaa-aaaaatatgacagttatg |
3686165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 3675579 - 3675711
Alignment:
| Q |
94 |
ttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-cttaataattacaacgtgtacggtgtatcgattcgggaagatc |
192 |
Q |
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||||||||| ||| ||||| ||||||||||||||| |||||||||||| |||||| ||| ||||||||||| || | ||||||||||||||||| |
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| T |
3675579 |
ttataacacttacgtgctgtcatttccgctcattccagaactatacactgcttcttcctttataattacaac----ac---gaatcgattcgggaagatc |
3675671 |
T |
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| Q |
193 |
gtgatgaggcatgttcttgataaatagcagtactagaaat |
232 |
Q |
| |
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|| |||| |||||||||||||||| |||||||||||| |
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| T |
3675672 |
atggtgagatgtgttcttgataaatagtagtactagaaat |
3675711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 331 - 364
Target Start/End: Original strand, 3703570 - 3703603
Alignment:
| Q |
331 |
agcttccaatccaagtagatacagataaagaatg |
364 |
Q |
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| T |
3703570 |
agcttccaatccaagtagatacagataaagaatg |
3703603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 3703533 - 3703571
Alignment:
| Q |
278 |
ttatgtcactaaaactgagaattgagtaataagtcatag |
316 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||| |
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| T |
3703533 |
ttatatcactaaaactaagaattgagtaataagtcatag |
3703571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 3703205 - 3703237
Alignment:
| Q |
251 |
gtcaattatgtttttatgaattctcatttatgt |
283 |
Q |
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| T |
3703205 |
gtcaattttgtttttatgaattctcatttatgt |
3703237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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