View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_6 (Length: 366)
Name: NF9588_low_6
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 36026502 - 36026840
Alignment:
| Q |
18 |
ggataagtatgaaacttgtctggatacatagcctgtttaatttctgtttttgtatttgtaagnnnnnnngttctcttgtagatcgctattgcctccagac |
117 |
Q |
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| T |
36026502 |
ggataagtatgaaacttgtctggatacatagcctgtttaatttctgtttttgtatttgtaagtttttttgttctcttgtagatcgctattgcctccagac |
36026601 |
T |
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| Q |
118 |
atgtgtcctcctcaacatctcattctagtatattctttttgcagataaagccaatgtaattgtaaaccccaagggttgaaaggtaataattaaaattgtt |
217 |
Q |
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| T |
36026602 |
atgtgtcctcctcaacatctcattctagtatattctttttgcagataaagccaatgtaattgtaaaccccaagggttgaaaggtaataattaaaattgtc |
36026701 |
T |
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| Q |
218 |
cttttaaattttgtaatgtgctgaaccatggcttagaacgattaaattgtatcgggcattaatattttgatgttcaagcatcatttcatgaatcaagcct |
317 |
Q |
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| T |
36026702 |
cttttaaattttgtaatgtgctgaaccatggcttagaacgattaaattgtatagggcattaatattttgatgttcaagcatcatttcatgaatcaagcct |
36026801 |
T |
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| Q |
318 |
ttttcctctcacttttttggcttggtttaatcatctgtg |
356 |
Q |
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| T |
36026802 |
ttttcctctcacttttttggcttggtttaatcatctgtg |
36026840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 16933820 - 16933688
Alignment:
| Q |
87 |
gttctcttgtagatcgctattgcctccagacatgtgtcctcctcaacatctcattctagtatattctttttgcagataaagccaatgtaattgtaaaccc |
186 |
Q |
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| T |
16933820 |
gttctcttgtaggtagctattgcctccaaacatgtgtcctcctcaacctctcattaacgtatattctcttttcaaataatgccaatggtattgtaaaccc |
16933721 |
T |
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| Q |
187 |
caaggg----ttgaaaggtaataattaaaattg |
215 |
Q |
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| T |
16933720 |
caagggagaaatgaaaggtaataattaaaattg |
16933688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 356
Target Start/End: Complemental strand, 16933136 - 16933043
Alignment:
| Q |
261 |
aaattgtatcgggcattaatattttgatgttcaagcatcatttcatgaatcaagcctttttcctctcacttttttggcttggtttaatcatctgtg |
356 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| | |||||||| |
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| T |
16933136 |
aaattgtattgggcatcaatattttgatgttcaagcatcatttcaagaatcaag-ctttttcctctc-tttttttggcttggttttaacatctgtg |
16933043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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