View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_8 (Length: 335)
Name: NF9588_low_8
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 32766503 - 32766195
Alignment:
| Q |
20 |
caatacttcaattgaaaatgctgtgcagtaatataatggaatgtggaaattcaaa-tcgataagtaattctcctaacatcttggaatttgttagttcaac |
118 |
Q |
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| T |
32766503 |
caatatttcaattgaaaatgctgtgcagtaatataatggaatgtggaaattcaaaatcgataagtaattctcctaacatcttggaattcgttagttcaac |
32766404 |
T |
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| Q |
119 |
cattgggttctaggtaaccgagtctatttgattgttataatagttctttttcatgaggagttaacaataaacccgtcattgctatgcatgtacaacagcg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
32766403 |
cattgggttctaggtaaccgagtctatttgattgttataatagttctttttcatgaggaattaataataaacccgtcattgctatgcatgtacaacagcg |
32766304 |
T |
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| Q |
219 |
tttatgttttatcatcatttatgtgacctatgaatcttttgcagatggtactttatgatactcccggtgttctacaagaacaaaggcacaagttcgactc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32766303 |
tttatgttttatcatcatttatgtgacctatgaatcttttgcagatggtactttatgatactcccggtgttctacaagaacaaaggcacaagttagactc |
32766204 |
T |
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| Q |
319 |
aatgatgat |
327 |
Q |
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||||||||| |
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| T |
32766203 |
aatgatgat |
32766195 |
T |
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