View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9588_low_9 (Length: 322)
Name: NF9588_low_9
Description: NF9588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9588_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 7088754 - 7088443
Alignment:
| Q |
1 |
tgattttgcaagagagccactgattttgaaaaacaaagcaccaagatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtg |
100 |
Q |
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| T |
7088754 |
tgattttgcaagagagccactgattttgaaaaacaaagcaccaagatggcatgaacaactgcaatgttggtgtttgaatttcaagggacgggttacggtg |
7088655 |
T |
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| Q |
101 |
gcttcagtgaagaattttcagcttgtagcagctgcagaacctagccaaaacgtttcggctgcagaacaagaaaaagttatactacaatttggaaaaattg |
200 |
Q |
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| T |
7088654 |
gcttcggtgaagaattttcagcttgtagcagctgcagaacctagccaaaacgtttcggctgcagaacaagaaaaagttatactacaatttggaaaaattg |
7088555 |
T |
|
| Q |
201 |
ggaaggacatattcaccatggattatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgaatg |
300 |
Q |
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| T |
7088554 |
ggaaggacatattcaccatggactatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgaatg |
7088455 |
T |
|
| Q |
301 |
ataactcctttg |
312 |
Q |
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| T |
7088454 |
ataactcctttg |
7088443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 39943079 - 39942985
Alignment:
| Q |
29 |
aaaaacaaagcaccaagatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagct |
123 |
Q |
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| T |
39943079 |
aaaaacaaggctcctaggtggcatgaacaactccaatgctggtgtttgaacttcaatggacgtgtgacagtcgcttcagttaaaaatttccagct |
39942985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 7878207 - 7877950
Alignment:
| Q |
44 |
agatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagcttgtagcagctgcagaaccta |
143 |
Q |
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|||||||||||||| || ||||| ||||| | ||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| || |||| || || |
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| T |
7878207 |
agatggcatgaacagctgcaatgctggtgcctaaatttcaagggccgcgttacagtggcttcagttaagaactttcaacttgtggctgctgttgagccat |
7878108 |
T |
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| Q |
144 |
gccaaaacgtttcggctgcagaacaagaaaaagttatactacaatttggaaaaattgggaaggacatattcaccatggattatcgatatcctctctccgc |
243 |
Q |
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| T |
7878107 |
ctcataatgttcctcctgcagagcaagagaaggttatcttgcagtttggaaagattggaaaagatatatttactatggattaccgttatccactctctgc |
7878008 |
T |
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| Q |
244 |
ttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgaatga |
301 |
Q |
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| T |
7878007 |
cttccaagcctttgcgatatgcttgagcagctttgatacaaaaccagcatgtgaatga |
7877950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 1200914 - 1200817
Alignment:
| Q |
185 |
caatttggaaaaattgggaaggacatattcaccatggattatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacac |
282 |
Q |
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| T |
1200914 |
caattcggcaaagttgggaaagatatgtttaccatggattatcgatatcctttatctgcattccaagcttttgcaatatgtttaagcagctttgacac |
1200817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 301
Target Start/End: Original strand, 32830166 - 32830284
Alignment:
| Q |
183 |
tacaatttggaaaaattgggaaggacatattcaccatggattatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacac |
282 |
Q |
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|||| |||||||| |||||||| || |||||||||||||| || || || ||||| || || |||||||| || ||||| |||| |||||||| || |
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| T |
32830166 |
tacagtttggaaagattgggaaagatatattcaccatggactactcttacccactctctgccttccaagccttcgccatctgcttgacaagctttgatac |
32830265 |
T |
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| Q |
283 |
aaaaccagcttgtgaatga |
301 |
Q |
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||||| |||||||||||| |
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| T |
32830266 |
caaacccgcttgtgaatga |
32830284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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