View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9589_low_2 (Length: 237)
Name: NF9589_low_2
Description: NF9589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9589_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 51349750 - 51349587
Alignment:
| Q |
1 |
atacttctaagtacaataatcatgaacacgtgtttagcatagctacaacaacaaaccttctcggtccaacaaggaacttttaccaacacattcatcgaca |
100 |
Q |
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| T |
51349750 |
atacttctatgtacaataatcatgaacacgtgtttaacatagctacaacaacaaaccttctcggtccaacaaggaacttttaccaacacattcattgaca |
51349651 |
T |
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| Q |
101 |
cttcaacatttagtgtccgacacacttgttgaagtgccaatgaatgtgttcataaaagttccta |
164 |
Q |
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| T |
51349650 |
cttcaacatttagtgtccgacacacttgttgaagtgtcaatgaatgtgttcctaaaagttccta |
51349587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 51359550 - 51359465
Alignment:
| Q |
4 |
cttctaagtacaataatcatgaacacgtgtttagcatagctacaacaacaaaccttctcggtccaacaaggaacttttaccaacacattcat |
95 |
Q |
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| T |
51359550 |
cttctaagtacaatactcatgaacacatgtttagc------acaactacaaaccttttctgtccaacaaggaacctttatgaacacattcat |
51359465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 51349561 - 51349532
Alignment:
| Q |
190 |
catatatttccttcaagtggatgtaatcgt |
219 |
Q |
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| T |
51349561 |
catatatttccttcaagtggatgtaatcgt |
51349532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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