View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9590_3 (Length: 668)

Name: NF9590_3
Description: NF9590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9590_3
NF9590_3
[»] chr7 (9 HSPs)
chr7 (1-662)||(42176243-42176904)
chr7 (405-662)||(42157423-42157680)
chr7 (405-662)||(42145467-42145724)
chr7 (405-662)||(42136164-42136421)
chr7 (1-64)||(42145157-42145220)
chr7 (1-60)||(42157125-42157184)
chr7 (97-171)||(22388018-22388092)
chr7 (243-327)||(44615025-44615109)
chr7 (266-329)||(25511715-25511778)
[»] chr1 (1 HSPs)
chr1 (229-321)||(15579533-15579625)
[»] chr8 (4 HSPs)
chr8 (189-281)||(30918122-30918215)
chr8 (243-306)||(30191083-30191146)
chr8 (243-336)||(45071439-45071532)
chr8 (95-135)||(26499593-26499633)
[»] chr5 (5 HSPs)
chr5 (97-171)||(26516180-26516254)
chr5 (173-282)||(29659344-29659453)
chr5 (96-171)||(20982249-20982324)
chr5 (98-157)||(31723696-31723755)
chr5 (251-295)||(4619780-4619824)
[»] chr3 (4 HSPs)
chr3 (176-330)||(36646300-36646456)
chr3 (256-330)||(45590729-45590803)
chr3 (217-326)||(37273173-37273282)
chr3 (103-163)||(48271968-48272028)
[»] chr2 (4 HSPs)
chr2 (98-163)||(29318755-29318820)
chr2 (259-327)||(40667488-40667557)
chr2 (107-171)||(33192085-33192149)
chr2 (98-170)||(42826269-42826341)
[»] chr6 (3 HSPs)
chr6 (103-171)||(4003714-4003782)
chr6 (217-296)||(2460103-2460182)
chr6 (94-135)||(3155055-3155096)
[»] chr4 (3 HSPs)
chr4 (176-281)||(2996569-2996676)
chr4 (217-296)||(27123304-27123383)
chr4 (216-321)||(33534096-33534201)


Alignment Details
Target: chr7 (Bit Score: 654; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Original strand, 42176243 - 42176904
Alignment:
Q  1 cccttttcatttcaccacctaccataatgtcagcacaaatatccaatccaagcatctgttaacaatataaaatccaggttttacaaatgtggttatgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176243 cccttttcatttcaccacctaccataatgtcagcacaaatatccaatccaagcatctgttaacaatataaaatccaggttttacaaatgtggttatgttt 42176342  T
Q  101 gtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttcgtacaagttataaattgttttcataagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176343 gtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttcgtacaagttataaattgttttcataagtt 42176442  T
Q  201 gtcttagagagtatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176443 gtcttagagagtatcaaaataagaagaaaacaacttaacgaaatatcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaag 42176542  T
Q  301 agataaggtcaattaagtcaatacaaacaaccctaaagtagaagcatataggtaatactaatatagtaataggaaatctgaaattataaacaacatatag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176543 agataaggtcaattaagtcaatacaaacaaccctaaagtagaagcatataggtaatactaatatagtaataggaaatctgaaattataaacaacatatag 42176642  T
Q  401 acataaaccttgagaacataatcagttacaaaactggttttttggcctgataatgcaatggccttcatgaaagcatcaatctcagggtctggtttaattc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176643 acataaaccttgagaacataatcagttacaaaactggttttttggcctgataatgcaatggccttcatgaaagcatcaatctcagggtctggtttaattc 42176742  T
Q  501 ctgcatctttctcccttcttgagagttccatcaataattcataccttgtgccaacacctagacaacatgatgaaaaatccaatgtctctctcaccgtatt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176743 ctgcatctttctcccttcttgagagttccatcaataattcataccttgtgccaacacctagacaacatgatgaaaaatccaatgtctctctcaccgtatt 42176842  T
Q  601 ttctccgtagtgaatgtcatgctgactaatatatgcacacgtttttgtagcaacgaattcat 662  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176843 ttctctgtagtgaatgtcatgctgactaatatatgcacacgtttttgtagcaacgaattcat 42176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 405 - 662
Target Start/End: Original strand, 42157423 - 42157680
Alignment:
Q  405 aaaccttgagaacataatcagttacaaaactggttttttggcctgataatgcaatggccttcatgaaagcatcaatctcagggtctggtttaattcctgc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  42157423 aaaccttgagaacataatcagttacaaaactggttttttggcctgataatgcaatagccttcatgaaagcatcaatctcagggtctggtttaattccagc 42157522  T
Q  505 atctttctcccttcttgagagttccatcaataattcataccttgtgccaacacctagacaacatgatgaaaaatccaatgtctctctcaccgtattttct 604  Q
     ||| |||||||||||||||||||  |||| | |||||| ||  ||||||| |||||||||| |||||||||||| || ||||||||||| ||| |||||    
T  42157523 ttctctctcccttcttgagagttctgtcaacatttcatatctactgccaacgcctagacaacgtgatgaaaaatctaaagtctctctcactgtaatttct 42157622  T
Q  605 ccgtagtgaatgtcatgctgactaatatatgcacacgtttttgtagcaacgaattcat 662  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  42157623 ccgtagtgaatgtcatgctgactaatataggcacaagtttttgcagcaacgaattcat 42157680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 405 - 662
Target Start/End: Original strand, 42145467 - 42145724
Alignment:
Q  405 aaaccttgagaacataatcagttacaaaactggttttttggcctgataatgcaatggccttcatgaaagcatcaatctcagggtctggtttaattcctgc 504  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||| ||    
T  42145467 aaaccttgagaacataatctgttacaaaactgctcttttggcctgataatacaacagccttcatgaaagcatcaatctcagggtctggtttaattccagc 42145566  T
Q  505 atctttctcccttcttgagagttccatcaataattcataccttgtgccaacacctagacaacatgatgaaaaatccaatgtctctctcaccgtattttct 604  Q
     ||| |||| ||| ||||||||||  |||| | |||||||||  |||||||||||||||||| |||||||||||| || ||||||||||| ||  |||||    
T  42145567 ttctctctctctttttgagagttctttcaacatttcatacctactgccaacacctagacaacgtgatgaaaaatctaaagtctctctcactgtcatttct 42145666  T
Q  605 ccgtagtgaatgtcatgctgactaatatatgcacacgtttttgtagcaacgaattcat 662  Q
    || ||||| |||||||||||||||||||| ||||| ||||||| ||| ||||||||||    
T  42145667 ccatagtggatgtcatgctgactaatataggcacaagtttttgcagcgacgaattcat 42145724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 405 - 662
Target Start/End: Original strand, 42136164 - 42136421
Alignment:
Q  405 aaaccttgagaacataatcagttacaaaactggttttttggcctgataatgcaatggccttcatgaaagcatcaatctcagggtctggtttaattcctgc 504  Q
    ||||||||||||| ||||| ||||  ||||||| ||  ||||| |||| ||   | ||||||||||| |||||||||| ||||||||| |||||||| ||    
T  42136164 aaaccttgagaacgtaatctgttatcaaactggcttcctggccagatagtgatgttgccttcatgaatgcatcaatctgagggtctggcttaattcccgc 42136263  T
Q  505 atctttctcccttcttgagagttccatcaataattcataccttgtgccaacacctagacaacatgatgaaaaatccaatgtctctctcaccgtattttct 604  Q
      |||||||||||||| | ||||||  ||| | |||||||||||| ||||| |||| ||| | |  ||||||||| |||| ||||||||||||  |||||    
T  42136264 tcctttctcccttcttaaaagttcctccaacatttcataccttgttccaacgcctaaacagcgtcctgaaaaatctaatgactctctcaccgtcatttct 42136363  T
Q  605 ccgtagtgaatgtcatgctgactaatatatgcacacgtttttgtagcaacgaattcat 662  Q
    || || |||| |||||| | || |||||| ||||| ||| || ||||||| |||||||    
T  42136364 ccataatgaaggtcatgttcaccaatataggcacatgttcttctagcaacaaattcat 42136421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42145157 - 42145220
Alignment:
Q  1 cccttttcatttcaccacctaccataatgtcagcacaaatatccaatccaagcatctgttaaca 64  Q
    ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42145157 cccttctcatttcatcaccaaccataatgtcagcacaaatatccaatccaagcatctgttaaca 42145220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42157125 - 42157184
Alignment:
Q  1 cccttttcatttcaccacctaccataatgtcagcacaaatatccaatccaagcatctgtt 60  Q
    ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  42157125 cccttctcatttcatcaccaaccataatgtcagcacaaatatccaatccaagcatctgtt 42157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 22388092 - 22388018
Alignment:
Q  97 gtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 171  Q
    ||||| |||||||||||| ||||||||||| |||||||   |||||| |||||||||||||  |||| |||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttc 22388018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 44615109 - 44615025
Alignment:
Q  243 atgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaatacaaa 327  Q
    |||||| |||||||| |||||||||||||  |||||| ||||||||  |||||| |  ||||||| ||||||||| |||| ||||    
T  44615109 atgtcataagttgttttcataagctctcctgaacagttttgcaagtggttatgctagtagataagctcaattaaggcaatccaaa 44615025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 25511715 - 25511778
Alignment:
Q  266 ctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaatacaaaca 329  Q
    |||||| |||||||||||||||||| ||||||   ||||||| |||| ||||||||| ||||||    
T  25511715 ctctcccaaacagtcttgcaagttcgtatgcctgtagataagttcaaataagtcaatccaaaca 25511778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 15579533 - 15579625
Alignment:
Q  229 aacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaa 321  Q
    |||||||||  || |||||| ||||||||  || ||||||||| |||||||||||||||||||||||| |  ||||||  |||||||||||||    
T  15579533 aacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtcttgcaagttcttatgctagtagataaattcaattaagtcaa 15579625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 30918122 - 30918215
Alignment:
Q  189 ttttcataagttgtcttagagag--tatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtct 281  Q
    |||||||||||| |||| |||||  |||  |||||||  ||||||||||||  |||||||||||||||||| ||||||||||||  |||||||||    
T  30918122 ttttcataagttttcttggagagcttatggaaataagctgaaaacaacttat-gaaatgtcacaagttgttttcataagctctctcaaacagtct 30918215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 30191146 - 30191083
Alignment:
Q  243 atgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataa 306  Q
    |||||| ||||||||  |||||||||||| |||||||||  ||||| |||||||||| ||||||    
T  30191146 atgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataa 30191083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 45071439 - 45071532
Alignment:
Q  243 atgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaatacaaacaaccctaa 336  Q
    |||||| |||||||| |||||||||||||||||||| ||  ||| || ||||| ||  ||||||| |||  |||| |||| ||||||| |||||    
T  45071439 atgtcataagttgttttcataagctctccgaaacagcctcccaattttttatgtcattagataagttcagataagccaatccaaacaaacctaa 45071532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 26499593 - 26499633
Alignment:
Q  95 atgtttgtataaacaacttatttaagcgcttaaaacataag 135  Q
    ||||||| |||||||||||| ||||| ||||||||||||||    
T  26499593 atgtttgaataaacaacttaattaagtgcttaaaacataag 26499633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 26516180 - 26516254
Alignment:
Q  97 gtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 171  Q
    ||||| |||||||||||| ||||||||||| | ||||||  |||||| | ||||||||||| ||||| |||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttc 26516254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 29659344 - 29659453
Alignment:
Q  173 tacaagttataaattgttttcataagttgtcttagagag--tatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctc 270  Q
    |||||||||||| ||||||||||||||| ||||||||||  |||  |||||||  ||||||||||||  || | |||| ||| |||| |||||| |||||    
T  29659344 tacaagttataagttgttttcataagttatcttagagagtttatataaataagctgaaaacaactta--gatacgtcataagctgttttcataatctctc 29659441  T
Q  271 cgaaacagtctt 282  Q
    | || |||||||    
T  29659442 caaaccagtctt 29659453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 20982324 - 20982249
Alignment:
Q  96 tgtttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 171  Q
    |||||| |||||||||||  ||||| ||||| | ||||||| |||||| | ||||||||||| ||||| |||||||    
T  20982324 tgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttc 20982249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 31723696 - 31723755
Alignment:
Q  98 tttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttat 157  Q
    |||| |||||| ||||| ||||||||||| ||||||| |||||||| ||||||| |||||    
T  31723696 tttggataaacgacttaattaagcgcttataacataaattcttatcatttaagtacttat 31723755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 4619780 - 4619824
Alignment:
Q  251 agttgttatcataagctctccgaaacagtcttgcaagttcttatg 295  Q
    ||||||| ||||||||||||| ||||||| |||||||| ||||||    
T  4619780 agttgttttcataagctctcccaaacagtgttgcaagtgcttatg 4619824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 36646456 - 36646300
Alignment:
Q  176 aagttataaattgttttcataagttgtcttagagagt--atcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccga 273  Q
    ||||||||| ||||||||||||| | || ||||||||  ||  |||||||| ||||||| ||||  || ||| || |||| |||  |||||||||||| |    
T  36646456 aagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctccca 36646357  T
Q  274 aacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaatacaaacaa 330  Q
    || |||||| ||||| | |||||||| ||||| | | || |||||| || |||||||    
T  36646356 aatagtcttacaagtgcctatgccaatagatatgcttaaataagtcgatccaaacaa 36646300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 45590729 - 45590803
Alignment:
Q  256 ttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaagtcaatacaaacaa 330  Q
    |||||||||||||||| |||||||||  ||||| ||||||| |  ||||||| ||||  |||||||| |||||||    
T  45590729 ttatcataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaacaa 45590803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 37273173 - 37273282
Alignment:
Q  217 aaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaattaa 316  Q
    |||||||  ||||||||||||  || |||||| ||||||||  |||||||||||| |||||||||  | ||| ||||||| || | ||||| |||| |||    
T  37273173 aaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaataa 37273272  T
Q  317 gtcaatacaa 326  Q
    | ||| ||||    
T  37273273 gccaacacaa 37273282  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 48272028 - 48271968
Alignment:
Q  103 ataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataa 163  Q
    ||||||| |||| ||||| ||||||||||||||| |||| | | ||||||||||| |||||    
T  48272028 ataaacagcttaattaagagcttaaaacataagtacttaacatataagtgcttatgtataa 48271968  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 29318755 - 29318820
Alignment:
Q  98 tttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataa 163  Q
    |||| ||||||||  || ||||||||||||||||||||| |||||| | |||||||||||| ||||    
T  29318755 tttggataaacaaaataattaagcgcttaaaacataagtgcttatcatataagtgcttatacataa 29318820  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 40667488 - 40667557
Alignment:
Q  259 tcataagctctccgaaacagtcttgcaagttcttatgccaag-agataaggtcaattaagtcaatacaaa 327  Q
    ||||||||||| | ||||| |||  ||||| ||||||||||| |||||||||||| |||| |||||||||    
T  40667488 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 40667557  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 33192085 - 33192149
Alignment:
Q  107 acaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 171  Q
    |||||||| ||||||||||||| |||||  |||||||    ||||||||||||| ||||||||||    
T  33192085 acaacttaattaagcgcttaaagcataaactcttatcacacaagtgcttatataaaaactatttc 33192149  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 42826269 - 42826341
Alignment:
Q  98 tttgtataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactattt 170  Q
    |||| |||||||||||| ||||||||||||| ||||  | || | | | ||||||||||||||||| ||||||    
T  42826269 tttggataaacaacttaattaagcgcttaaagcatacatactcaccatataagtgcttatatataagctattt 42826341  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 4003782 - 4003714
Alignment:
Q  103 ataaacaacttatttaagcgcttaaaacataagttcttatcctttaagtgcttatatataaactatttc 171  Q
    |||||||||||| ||||| ||||| | |||||||| |||| || ||||||||||| ||||| |||||||    
T  4003782 ataaacaacttaattaagtgcttatagcataagtttttatgctataagtgcttatgtataagctatttc 4003714  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 2460182 - 2460103
Alignment:
Q  217 aaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgc 296  Q
    |||||||  ||||||||||||| || |||||| ||||||||  |||||||||||  |||||||||  ||||| |||||||    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgc 2460103  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 3155055 - 3155096
Alignment:
Q  94 tatgtttgtataaacaacttatttaagcgcttaaaacataag 135  Q
    |||||||| |||||||||||||||||||||||| | ||||||    
T  3155055 tatgtttggataaacaacttatttaagcgcttatagcataag 3155096  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 2996569 - 2996676
Alignment:
Q  176 aagttataaattgttttcataagttgtcttagagag--tatcaaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccga 273  Q
    ||||||||| ||||||||||||| | |||| |||||  ||| ||||||||  ||||| | ||||  || |||||| |||||||| ||||||||||||  |    
T  2996569 aagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctca 2996668  T
Q  274 aacagtct 281  Q
    ||||||||    
T  2996669 aacagtct 2996676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 27123383 - 27123304
Alignment:
Q  217 aaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgc 296  Q
    |||||||  ||||||||||||| || |||||| ||||||||  |||||||||||  |||||||||  ||||| |||||||    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgc 27123304  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 33534201 - 33534096
Alignment:
Q  216 aaaataagaagaaaacaacttaacgaaatgtcacaagttgttatcataagctctccgaaacagtcttgcaagttcttatgccaagagataaggtcaatta 315  Q
    ||||||||  ||||||||||||  || ||||||||| ||||| ||||||||||||  ||| | |||  ||||| |||||| ||  ||||||| |||| ||    
T  33534201 aaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaata 33534102  T
Q  316 agtcaa 321  Q
    ||||||    
T  33534101 agtcaa 33534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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