View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9590_4 (Length: 644)
Name: NF9590_4
Description: NF9590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9590_4 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 128 - 535
Target Start/End: Complemental strand, 44749612 - 44749205
Alignment:
| Q |
128 |
ttatacgtttagcattaatgagaccatgtcttttataggagcaaactaaactaattcacgtcctttttatagatctaatgtatgactatggacaataaaa |
227 |
Q |
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| T |
44749612 |
ttatacgtttagcattaatgagaccatgtcttttatatgagcaaactaaactaattcacgtcctttttatatatctaatgtatgactatggacaataaaa |
44749513 |
T |
|
| Q |
228 |
gattttgcaatcaacctagagcaaacttatcctatagcttattcaacgaaccaaattatactcattagagtaaagtgatatttgtaatcaacctagagta |
327 |
Q |
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| T |
44749512 |
gattttgcaatcaacctagagcaaacttatcctatagcttattcaacgaaccaaattatactcattagagtaaagtgatatttgtaatcaacctagagta |
44749413 |
T |
|
| Q |
328 |
gacatatcctatagcttattcaaacaaacaaattattctcattatggttaaatgagattttgtaatcaactcagaggagacctatcttatagcttattca |
427 |
Q |
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| T |
44749412 |
gacatatcctatagcttattcaaacaaacaaattattcttattatggttaaatgagattttgtaatcaactcagagcagacctatcttatagcttattcc |
44749313 |
T |
|
| Q |
428 |
aacaagcaaattatactcattattaactattaaggtgggccctaatcattatcaaggtttattgcaagagttgtctttgtaagctaccttacttacttta |
527 |
Q |
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| T |
44749312 |
aacaagcaaattatactcattattagctattaaggtaggccctaatcattatcaaggtttatttcaagagttgtctttgtaagctaccttacttacttca |
44749213 |
T |
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| Q |
528 |
tatagtag |
535 |
Q |
| |
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|||||||| |
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| T |
44749212 |
tatagtag |
44749205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 44749704 - 44749635
Alignment:
| Q |
28 |
atatttccttgagaagttgtaaattatgactgaagcttctagacatgataacaacgtgaggggaatcttt |
97 |
Q |
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| T |
44749704 |
atatatccttgagaagttgtaaattatgaccgaagcttctagacatgataacaacgtgaggagaatcttt |
44749635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 19531933 - 19531861
Alignment:
| Q |
465 |
ggccctaatcattatcaaggtttattgcaagagttgtctttgtaagctaccttacttactttatatagtagga |
537 |
Q |
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| T |
19531933 |
ggccctaatcattatcaaggtttcttccaagaaatgcctttgtaagctaccttgcctactttatatagtagga |
19531861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 34803447 - 34803374
Alignment:
| Q |
339 |
tagcttattcaaacaaacaaattattctcattatggttaaatgagattttgtaatcaactcagaggagacctatc |
413 |
Q |
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| T |
34803447 |
tagcttattcaa-caagcaaattatactcattgtggcgaaatgagattttgtaatcaacctagagcagacctatc |
34803374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 4998642 - 4998585
Alignment:
| Q |
339 |
tagcttattcaaacaaacaaattattctcattatggttaaatgagattttgtaatcaac |
397 |
Q |
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| T |
4998642 |
tagcttattcaa-caagcaaattatactcattgtggcgaaatgagattttgtaatcaac |
4998585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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