View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9590_5 (Length: 464)
Name: NF9590_5
Description: NF9590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9590_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 2939195 - 2938737
Alignment:
| Q |
1 |
cagaattaaaacgaaacccgcacgaagttgtactccataagtagcacgatgataaaccctaatccacgatctgcaaaatcgaaccaagatctgatatcta |
100 |
Q |
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| T |
2939195 |
cagaattaaaacaaaacccgcacgaagt-gtactccattagtagcacgatgataaaccctaatccacgatcttcaaaatcgaaccaagatctgatatctg |
2939097 |
T |
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| Q |
101 |
aaagattggttcgatttttaagattgtgggttacggtttatcatcgtgctactcgtggagtacaacttcgtgcaagtttcgtttcaattctgaagatcgt |
200 |
Q |
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| T |
2939096 |
aaagattggttcgatttttaagatcgtgggttacgatttatcgtcgtgctactcgtggagtacaacttcgtgcgagtttcgtttcaattctgaagatcgt |
2938997 |
T |
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| Q |
201 |
ggattagggtttatcatcctgctgctactcatggattacaactccgggtgtgtttcgtgccatgttgaatgcaaaaagattaaagtttgaatctttcttc |
300 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2938996 |
ggattagggtttatcatcc---tgctactcgtggattacaactccgggtgtgtttcgtgccatgttgaatgcaaaaagattaaagtttgaatcttttttc |
2938900 |
T |
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| Q |
301 |
atgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgcatataaaatannnnnnnnnataatagatgattattaaaccaaatgtaa |
400 |
Q |
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| T |
2938899 |
atgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgcatatagaata-ttttttttataatagatgattattaaaccaaatgaaa |
2938801 |
T |
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| Q |
401 |
cacttcatataggaacggaacatgaagnnnnnnnntagggaaacaaaacaccttatatgaagac |
464 |
Q |
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| T |
2938800 |
cacttcaaataggaacgcaacatgaagaaaaaaaatagggaaacaaaacaccttaaatgaagac |
2938737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 2939005 - 2939356
Alignment:
| Q |
1 |
cagaattaaaacgaaacccgcacgaagttgtactccataagtagcacgatgataaaccctaatccacgatctgcaaaatcgaaccaagatctgatatcta |
100 |
Q |
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||||||| ||||||||| ||||||||||||||||||| |||||||||| |||||| | ||| ||||||||| ||||||||||||| | | | || | |
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| T |
2939005 |
cagaattgaaacgaaactcgcacgaagttgtactccacgagtagcacgacgataaatcgtaacccacgatcttaaaaatcgaaccaatctttcagatatc |
2939104 |
T |
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| Q |
101 |
aaagattggttcgatttttaagattgtgggttacggtttatcatcgtgctactcgtggagtacaacttcgtgcaagtttcgtttcaattctgaagatcgt |
200 |
Q |
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| T |
2939105 |
agatcttggttcgattttgaagatcgtggattagggtttatcatcgtgctactaatggagtaca-cttcgtgcgggttttgttttaattctgcaaatcgt |
2939203 |
T |
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| Q |
201 |
ggattagggtttatcatcctgctgctactcatggattacaactccgggtgtgtttcgtgccatgttgaatgcaaaaagattaaagtttgaatctttcttc |
300 |
Q |
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| T |
2939204 |
ggattagggtttatcatcgtgctact-cacgtggattacaactccgggtgggttttgtgccgtgttgaatgcaaaaatattaaaggttgaatcttt-ttc |
2939301 |
T |
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| Q |
301 |
atgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgcata |
355 |
Q |
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| T |
2939302 |
atgatgctttttaatgtcatttgatttttaaggaggattagctttgatttacata |
2939356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 2939229 - 2939194
Alignment:
| Q |
40 |
agtagcacgatgataaaccctaatccacgatctgca |
75 |
Q |
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| T |
2939229 |
agtagcacgatgataaaccctaatccacgatttgca |
2939194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2938957 - 2939003
Alignment:
| Q |
26 |
agttgtactccataagtagcacgatgataaaccctaatccacgatct |
72 |
Q |
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| T |
2938957 |
agttgtaatccacgagtagcaggatgataaaccctaatccacgatct |
2939003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 33523595 - 33523516
Alignment:
| Q |
279 |
attaaagtttgaatctttcttcatgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgcatataa |
358 |
Q |
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| T |
33523595 |
attaaaggttgaatcttttctcatgatgctttttaaggtcatttgatttttaaagattattaactttgatttacatataa |
33523516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 33523694 - 33523730
Alignment:
| Q |
58 |
cctaatccacgatctgcaaaatcgaaccaagatctga |
94 |
Q |
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| T |
33523694 |
cctaattcacgatctgcaaaatcgaaccaagatctga |
33523730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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