View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9590_6 (Length: 385)
Name: NF9590_6
Description: NF9590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9590_6 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 27286961 - 27286741
Alignment:
| Q |
32 |
atcctcaaaaggaatgtgctccttcattgtattggctctttgaaagaagttagaatctttaagaatatccattttagaaatccttttgggaaggaccttc |
131 |
Q |
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| T |
27286961 |
atcctgaaaaggaatgtgctccttcattgtattggctctttgaaagaagttagaatctttaagaatatccattttagaaatccttttgggaaggaccttc |
27286862 |
T |
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| Q |
132 |
tttctttgtctggtttctgtttattgtgtccttttcaattctaggagactaatccaaaatagtactacaacattattatgcaccttacccttcaattgtg |
231 |
Q |
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| T |
27286861 |
tttgtttgtctggtttctgtttattgtgtccttttcaattctaggagcctaatccaaaatagtactacaacattattatgcaccttacccttcaattgtg |
27286762 |
T |
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| Q |
232 |
ttcaaattttggtgatatata |
252 |
Q |
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| T |
27286761 |
ttcaaattttggtgatatata |
27286741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 27286749 - 27286679
Alignment:
| Q |
295 |
tgatatatacaatacaaaactatatcaaattttaaagaaatttgtatcactactaaggcatgtgatgatgt |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27286749 |
tgatatatacaatacaaaactatatcaaattttaaagaaatttgtatcactactaaggcatgtaatgatgt |
27286679 |
T |
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