View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9590_low_1 (Length: 474)
Name: NF9590_low_1
Description: NF9590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9590_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 13795088 - 13794648
Alignment:
| Q |
17 |
cacaaacaagatgctggagagatctttcatttcttactgactcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtga |
116 |
Q |
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| T |
13795088 |
cacaaacaagatgctggagagatctttcatttcttactgactcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtga |
13794989 |
T |
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| Q |
117 |
tctgaatcaatgggatcaacgagtttatttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaa |
216 |
Q |
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| T |
13794988 |
tctgaatcaatgggatcaacgagtttacttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaa |
13794889 |
T |
|
| Q |
217 |
taatatttagtaaacaaaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaac |
316 |
Q |
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| T |
13794888 |
taataattagtaaacaaaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaac |
13794789 |
T |
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| Q |
317 |
aagttgagtttctctcaatcttgttttattttcaaaattacctttgctattgtcactaaatttgtttgnnnnnnnnnncttgtattggattaggttctct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13794788 |
aagttgagtttctctcaatcttgttttattttcaaaattacctttgctattgtcactaaatttgtttg--ttttttttcttgtattggattaggttctct |
13794691 |
T |
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| Q |
417 |
gtttgatgattttattggattttatcactgattgagttctctg |
459 |
Q |
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| T |
13794690 |
gtttgatgattttattggattttatcactgattgagttctctg |
13794648 |
T |
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