View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9591_2 (Length: 490)
Name: NF9591_2
Description: NF9591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9591_2 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0014 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Complemental strand, 6623312 - 6622833
Alignment:
| Q |
11 |
cagagacaagagttgcaattctgctgctgaagagaaattcaggatgggaattcatgaacttctcgaggagagtctagaattttggatgaaattcagtact |
110 |
Q |
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| T |
6623312 |
cagagacaagagttgcaattctgctgctgaagagaaattcaggaggggaattcatgaacttctcgaggagagtctagaattttggatgaaattcagtact |
6623213 |
T |
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| Q |
111 |
tctttcactgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttgaagaaaactggaaattatcaataggaatatgat |
210 |
Q |
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| T |
6623212 |
tctttcactgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttcaagaaaactggaaattatcaatatgaatacgat |
6623113 |
T |
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| Q |
211 |
tttataaactcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattgaaattcaagtgctgaaaattatga |
310 |
Q |
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| T |
6623112 |
tttataaactcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattgatattcaagtgctgaaaattatga |
6623013 |
T |
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| Q |
311 |
tttcaggttcagaagctttcaagcaaccaagttctaagcttgaaaatacggtttggaaatgtctaacatttggagaagttgctgtagtactacgctactt |
410 |
Q |
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| T |
6623012 |
tttcaggttcagaagctttcaagcaaccaagttctaagcttgaaaatacggtttggaaatgtctaacatttggagaagttgctgtagtactacgctactt |
6622913 |
T |
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| Q |
411 |
ctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaacatctctaacgcacatgcacttaa |
490 |
Q |
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| T |
6622912 |
ctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaacatctctaacgcacatgcacttaa |
6622833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 119 - 337
Target Start/End: Original strand, 90415 - 90628
Alignment:
| Q |
119 |
tgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttgaagaaaactggaaattatcaataggaatatgattttataaa |
218 |
Q |
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| T |
90415 |
tgagatacaaaaatatgtaaccactg-aaaagatttactaatttatgtatcaaaactt----aaaactggaaatcatccgaaggaatatgattttataaa |
90509 |
T |
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| Q |
219 |
ctcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattgaaattcaagtgctgaaaattatgatttcaggt |
318 |
Q |
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| T |
90510 |
ctcgtgttgtgcattgctgaatgaagaacatcaacagcattgaaatccaagagaagacggcagtattgaaatccaagtgctgaaaacgatgatttcaggt |
90609 |
T |
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| Q |
319 |
tcagaagctttcaagcaac |
337 |
Q |
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| T |
90610 |
tcacaagctatcaagcaac |
90628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 382 - 480
Target Start/End: Original strand, 90629 - 90726
Alignment:
| Q |
382 |
ggagaagttgctgtagtactacgctacttctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaacatctctaacgcac |
480 |
Q |
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| T |
90629 |
ggagaagttgccacagtactacgctacttctgtgatgtttcacagtcctt-cttcttctattagtaaaaactggggcagtaagaacatctctaacgcac |
90726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 90361 - 90417
Alignment:
| Q |
11 |
cagagacaagagttgcaattctgctgctgaagagaaattcaggatgggaattcatga |
67 |
Q |
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| T |
90361 |
cagagacaagagttgcagttctgctgttgaagagaaattccggatgggaattcatga |
90417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 28751910 - 28751782
Alignment:
| Q |
29 |
ttctgctgctgaagagaaattcaggatgggaattcatgaacttctcgaggagagtctagaattttggatgaaattcagtacttctttcactgagatacaa |
128 |
Q |
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| T |
28751910 |
ttctgctgttgaagagaagtttcggatgggtatcgacgaacttctcgaggagaatctagaattctggatgaaattcagcacttctttcaccgagatacag |
28751811 |
T |
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| Q |
129 |
aaatatgtaaccactgcaaaagatttact |
157 |
Q |
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| T |
28751810 |
aaatacgaaacaactacaaaagatttact |
28751782 |
T |
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