View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9591_low_3 (Length: 230)
Name: NF9591_low_3
Description: NF9591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9591_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 1985227 - 1985322
Alignment:
| Q |
15 |
caaaggatccaacaattctcctaagtatgtctcttggaatagcaccttgcataaagcttttatacaatgacatattaaaggcagatatatacatcc |
110 |
Q |
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| T |
1985227 |
caaaggatccaacaattctcctaagtatgtctcttggaatagcaccctgcataaagcttttatacaatgacaaattaaaggaagatatatacatcc |
1985322 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 1985319 - 1985367
Alignment:
| Q |
163 |
atccaaatttctatatcttcttattatctatataatctctataagttacaa |
213 |
Q |
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| T |
1985319 |
atccaaatttctatatcttcttattatc--tataatctctataagttacaa |
1985367 |
T |
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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 6934578 - 6934653
Alignment:
| Q |
117 |
accactggtcatcattagttttcgttgatgtaggcttat-tatttcaatccaaatttctatatcttcttattatct |
191 |
Q |
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| T |
6934578 |
accactggtcttcattagctttctttgatgtaggcttaactatttcaatccaaatttctttatcttcttattatct |
6934653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 6947166 - 6947265
Alignment:
| Q |
109 |
cctctcaaaccactggtcatcattagttttcgttgatgtaggcttattatttcaatccaaatttctatatcttcttattatctatataatctctataagt |
208 |
Q |
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| T |
6947166 |
cctctcaaatcactagtcttagttagctttctttgatgtaggcttat---ttcaatccaaatttctatatcttcttattatc--tataatctctgtaagt |
6947260 |
T |
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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 6947098 - 6947165
Alignment:
| Q |
15 |
caaaggatccaacaattctcctaagt---atgtctcttggaatagcaccttgcataaagcttttatac |
79 |
Q |
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| T |
6947098 |
caaaggatccaacaattctcctaagtcacatgtctcttggaagaggaccctgcataaagcttttatac |
6947165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 6920769 - 6920808
Alignment:
| Q |
154 |
attatttcaatccaaatttctatatcttcttattatctat |
193 |
Q |
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| T |
6920769 |
attatttcaatccaaatttctatatctcctaattatctat |
6920808 |
T |
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