View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9592_high_2 (Length: 448)
Name: NF9592_high_2
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 2592292 - 2591860
Alignment:
| Q |
17 |
aattaggtgttcccatatgtgatgagtttggtactagtacttgttcttcacctccaatttgtccttcaacactctcccagctgaaaataaagctaggaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592292 |
aattaggtgttcccatatgtgatgagtttggtactagtacttgttcttcacctccaatttgtccttcaacactctcccagctgaaaataaagctaggaca |
2592193 |
T |
|
| Q |
117 |
ttgttgttgagtttccacccattcattcaactcttcttgtctttgcaattgcaatgactccaatgttaataactctcctccttcctcatccatattacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592192 |
ttgttgttgagtttccacccattcattcaactcttcttgtctttgcaattgcaatgactccaatgttaataactctcctccttcctcatccatattacaa |
2592093 |
T |
|
| Q |
217 |
gattgcacttgatcaattggcaccatgctgttttccacattattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagcta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592092 |
gattgcacttgatcaattggcaccatgctgttttccacattattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagcta |
2591993 |
T |
|
| Q |
317 |
ttgcagctggatgaggaggaagtgtctgaacttgat---------gatgatcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591992 |
ttgcagctggatgaggaggaagtgtctgaacttgatgatgttgatgatgatcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcatg |
2591893 |
T |
|
| Q |
408 |
atggaatagtacttctggtcttattacattggt |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2591892 |
atggaatagtacttctggtcttattacattggt |
2591860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University