View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_high_3 (Length: 440)
Name: NF9592_high_3
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 52799550 - 52799972
Alignment:
| Q |
1 |
ctaaaaaattatggggatcaaaacctgaaactgatatatttgtgaccactcatatgcttaaaccaaacaaataaacnnnnnnnnctttagtaatttcctt |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
52799550 |
ctaaaaaattatagggatcaaaacctgaaattgatatatttgtgaccactcatatgcttaaaccaaacaaataaacttttttt-cttcagtaatttcctt |
52799648 |
T |
|
| Q |
101 |
ataggaatccttaaagcagaagcatcatgcacatatagatcgacaaacctcaactaggtaagnnnnnnn---ttgatgtgtcgatggagggagagagata |
197 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| | | ||||| |||||||||||||||||| |
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| T |
52799649 |
ataggaatccttaaagcagaagcatca----caaatagatcgacaaaccccaactaggtaaaaaaaaaaaaatcggtgtgtggatggagggagagagata |
52799744 |
T |
|
| Q |
198 |
gttaacggcatataagacggagtaggacggaaagcaagggtccccactagccaacatgaaacagcgttagcgataaaaagcatagacatttataacaaac |
297 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52799745 |
gttaacggcatataagacggagttggacggaaagcaagggtccccactagccaacatgaaacagcgttaacgataaaaagcatagacatttataacaaac |
52799844 |
T |
|
| Q |
298 |
ccttgagaaactttctgtaatttggcaaagaccataccattataggaaatgcatctctcaactttatctttctaatttccatgccaagacttatctatac |
397 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52799845 |
ccttgagaaactttctgtaatttggcaaagaccataccattataggaaatgcatctctcaactttatctttctaatttccatgccaagacttatctatac |
52799944 |
T |
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| Q |
398 |
agagggtaggaactaggaaggaaggaga |
425 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
52799945 |
agagggtaggaactaggaaggaaggaga |
52799972 |
T |
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