View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_1 (Length: 613)
Name: NF9592_low_1
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 10 - 597
Target Start/End: Complemental strand, 2782229 - 2781642
Alignment:
| Q |
10 |
gagtttggtgtttaccgttccagtttttctaacttccatggtgtttatgtatatacctggaataaaaaatttattggattcaaaaatcgtgaagatgctt |
109 |
Q |
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| T |
2782229 |
gagtttggtgtttaccgttccagtttttctaacttccatggtgtttatgtatatacctggaataaaaaatttattggattcgaaaatcgtgaagatgctt |
2782130 |
T |
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| Q |
110 |
actattggagaggttattcgttgggtgcttgcaacaccagtgcagttcattttcgggtggcgattttatactggtgcttataaatcattgcgccgtggtt |
209 |
Q |
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| T |
2782129 |
actattggagaggttattcgttgggtgcttgcaacaccagtgcagttcattttcgggtggcgattttatactggtgcttataaatcattgcgccgtggtt |
2782030 |
T |
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| Q |
210 |
ctgctaatatggatgtgctgatagcactgggaacaaatgcagcttatttctactctgtttattctgttttgagagctgctacttctaaggtttttgaagg |
309 |
Q |
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| T |
2782029 |
ctgctaatatggatgtgctgatagcactgggaacaaatgcagcttatttctattctgtttattctgttttgagagctgctacttctaaggtttttgaagg |
2781930 |
T |
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| Q |
310 |
tactgatttctttgagactagtgcgatgcttatttcgtttattctattaggaaagtatcttgaggttttagctaaggggaaaacatcaaatgcaattgca |
409 |
Q |
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| T |
2781929 |
tactgatttctttgagactagtgcgatgcttatttcgtttattctattaggaaagtatcttgaggttttagctaaggggaaaacatcaaatgcaattgca |
2781830 |
T |
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| Q |
410 |
aagttaatgaatttgacacctgatactgctatattgttgagtttggatggtgaagggaatgttgttggggaggaagaaattgatagtaggttggttcaga |
509 |
Q |
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| T |
2781829 |
aagttaatgaatttgacacctgatactgctatattgttgagtttggatggtgaagggaatgttgttggggaggaagaaattgatagtaggttggttcaga |
2781730 |
T |
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| Q |
510 |
agaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcatgtgaatgagagtat |
597 |
Q |
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| T |
2781729 |
agaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcatgtgaatgagagtat |
2781642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 597
Target Start/End: Original strand, 33918560 - 33918673
Alignment:
| Q |
484 |
agaaattgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcat |
583 |
Q |
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| T |
33918560 |
agaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgtgccgggcgcgaaagtagcatcagatggttttgttgtttggggacaaagtcat |
33918659 |
T |
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| Q |
584 |
gtgaatgagagtat |
597 |
Q |
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| T |
33918660 |
gtaaatgagagtat |
33918673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 33900765 - 33900818
Alignment:
| Q |
218 |
atggatgtgctgatagcactgggaacaaatgcagcttatttctactctgtttat |
271 |
Q |
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|||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
33900765 |
atggatttgttgatagcattaggaacaaatgcagcttatttctattctgtttat |
33900818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 33900557 - 33900626
Alignment:
| Q |
10 |
gagtttggtgtttaccgttccagtttttctaacttccatggtgtttatgtatatacctggaataaaaaat |
79 |
Q |
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| T |
33900557 |
gagtttggtttttactgttcctgtttttttaacatctatggttcttatgtatatacctggagttaaaaat |
33900626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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