View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_11 (Length: 420)
Name: NF9592_low_11
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 32265903 - 32265515
Alignment:
| Q |
20 |
ctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgttaatagaaggggggatgacatatttttcct |
119 |
Q |
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| T |
32265903 |
ctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgctaatagaaggggggatgacatatttttcct |
32265804 |
T |
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| Q |
120 |
atgttaaaatggagccaggggaaatttttacatggcccaatcaaacttcctatacagtaatcttgttccaacacaatcaccttcacaagatatgcttcat |
219 |
Q |
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| T |
32265803 |
atgttaaaatggagccaggggaaatttttacatggcccaatcaaacttcctatacagtaatcttgttccaacacaatcaccttcacaagatatgcttcat |
32265704 |
T |
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| Q |
220 |
actggacgtccaaccgaacgacttctttcttctgcgtcgtggtgcaaagttgaggccaaacatctccttgaaagcctgatcaggctcaactgtaccaacc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265703 |
actggacgtccaaccgaacgacttctttcttctgcgtcgtggtgcaaagttgaggccaaacatctccttgaaagcctgatcaggctcaactgtaccaacc |
32265604 |
T |
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| Q |
320 |
agctttgcaacaatggttgcactctctctaacatggtttatatctgtttcagaccataggcaatgagccaattgcaacctcctatgctt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32265603 |
agctttgcaacaatggttgcactctctctaacatggtttatatctgtttcagaccataggcgatgagccaattgcaacctcctatgctt |
32265515 |
T |
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