View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_12 (Length: 414)
Name: NF9592_low_12
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 110 - 397
Target Start/End: Original strand, 11247333 - 11247617
Alignment:
| Q |
110 |
tttatgagcattgtcatgctcaatttatttctttgcatttggttgatctgttgggagttgccatctctagtctagacgttgtttagtgcttcttcagcat |
209 |
Q |
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| T |
11247333 |
tttatgagcattgtcatgctcaatttatttctttgcatttggttgatttgttgggagttgccatctctagactaattgttgtttagtcattcttcagcat |
11247432 |
T |
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| Q |
210 |
ctgacactctttatttccaaaaagaattattattattgttattattcaaaacggtgaacttcgaccacaagattgatacatctcttaagatttnnnnnnn |
309 |
Q |
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| T |
11247433 |
ctgacactctttatttccaaaaagaatcattattattgttattattcaaaatggtgaacttcgaacacaagattgattcatctcttaagattt-aaaaaa |
11247531 |
T |
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| Q |
310 |
tgtttatataaatttctgtttgtaaagacaaaaagtaaagaatacaaatagattattagtgtgg-aacccgagaagaatgggcattatt |
397 |
Q |
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| T |
11247532 |
tgtttatataaatttctgtttttaaagacaaaaactaaagaatacaaatag---attagtgtggaaacccgagaagaatgggcattatt |
11247617 |
T |
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