View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_13 (Length: 371)
Name: NF9592_low_13
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 45271287 - 45270945
Alignment:
| Q |
18 |
tgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaat |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45271287 |
tgttgacgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaat |
45271188 |
T |
|
| Q |
118 |
gttgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgtta |
217 |
Q |
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| T |
45271187 |
gctgttgttgccaatgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgtta |
45271088 |
T |
|
| Q |
218 |
aggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaa |
317 |
Q |
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| T |
45271087 |
aggccggtgtctatgacgaatacatcactgtccccaaggaggctgttaacattcttatgtatggtgatggccctgcaaagaccattgtcactggtagaaa |
45270988 |
T |
|
| Q |
318 |
gaaccaaaacgccggtaccaatatacagaacagtgcccccttt |
360 |
Q |
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|||||||| ||||||||||| | |||||||| |||| ||||| |
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| T |
45270987 |
gaaccaaatggccggtaccaacacacagaacactgccaccttt |
45270945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 45283061 - 45282760
Alignment:
| Q |
18 |
tgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaat |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
45283061 |
tgttgacgatcaaggatacccttcatggatctcttcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaat |
45282962 |
T |
|
| Q |
118 |
gttgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgtta |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282961 |
gctgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgtta |
45282862 |
T |
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| Q |
218 |
aggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
45282861 |
aggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcactggtagaaa |
45282762 |
T |
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| Q |
318 |
ga |
319 |
Q |
| |
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|| |
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| T |
45282761 |
ga |
45282760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 45274820 - 45274517
Alignment:
| Q |
18 |
tgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaat |
117 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
45274820 |
tgttgacgatcaaggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaat |
45274721 |
T |
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| Q |
118 |
gttgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgtta |
217 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| |
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| T |
45274720 |
gctgttgttgccaatgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgtta |
45274621 |
T |
|
| Q |
218 |
aggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaa |
317 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |
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| T |
45274620 |
aggctggtgtctatgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaa |
45274521 |
T |
|
| Q |
318 |
gaac |
321 |
Q |
| |
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|||| |
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| T |
45274520 |
gaac |
45274517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 45294449 - 45294162
Alignment:
| Q |
18 |
tgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || ||||| |
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| T |
45294449 |
tgttgatgatcaaggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaat |
45294350 |
T |
|
| Q |
118 |
gttgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgtta |
217 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
45294349 |
gctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgtta |
45294250 |
T |
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| Q |
218 |
aggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgt |
305 |
Q |
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|||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
45294249 |
aggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgt |
45294162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 45303409 - 45303122
Alignment:
| Q |
18 |
tgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || ||||| |
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| T |
45303409 |
tgttgatgatcaaggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaat |
45303310 |
T |
|
| Q |
118 |
gttgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgtta |
217 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
45303309 |
gctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgtta |
45303210 |
T |
|
| Q |
218 |
aggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgt |
305 |
Q |
| |
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|||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
45303209 |
aggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgt |
45303122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 38588302 - 38588231
Alignment:
| Q |
174 |
ctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcac |
245 |
Q |
| |
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|||||| ||||||||| |||||||||||| ||||||| || ||||| || ||||||||||| |||||||| |
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| T |
38588302 |
ctcttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacgagtacatcac |
38588231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
194 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
239 |
Q |
| |
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|||| |||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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