View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_14 (Length: 366)
Name: NF9592_low_14
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 36520012 - 36520340
Alignment:
| Q |
18 |
agatgataggtatattaaattaattgatatgaatttccaatattgaccttataatattgatacctacaaatatgtaaataaattattaaaagtattacta |
117 |
Q |
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| T |
36520012 |
agatgataggtatattaaattaattgatatgaatttccaatattgaccttataatattgatacctac---tatgtaaataaattattaaaagtattacta |
36520108 |
T |
|
| Q |
118 |
taaaacatattacctcatacaataggtaagaaatagcacaacaacatgctaaaacacgtaaagttatccct--nnnnnnnnncaagtaatgttacctctc |
215 |
Q |
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| T |
36520109 |
taaaacatattacctcatacaataggtaagaaatagcacaacaacatgctaaaacacgtaaagttatccctaaaaaaaaaaacaagtaatgttacctctc |
36520208 |
T |
|
| Q |
216 |
atacggttgttacgttctccctaggttgcaggttcgattctcccaatccgatctttgatgagtaataaaatccttctctctcatgatatagttcataaaa |
315 |
Q |
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| T |
36520209 |
atacggttgttacgttctccctaggttgcaggttcgattctcccaatccgatctttgatgagtaataaaatccttctctctcatgatatagttcataaaa |
36520308 |
T |
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| Q |
316 |
tcttacctatgaaaagcaaatgcatttctgta |
347 |
Q |
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| T |
36520309 |
tcttacctatgaaaagcaaatgcatttctgta |
36520340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 36516007 - 36516095
Alignment:
| Q |
259 |
caatccgatctttgatgagtaataaaatccttctctctcatgatatagttcataaaatcttacctatgaaaagcaaatgcatttctgta |
347 |
Q |
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| T |
36516007 |
caatctgacctttgatgagtaataaaatccttatttctcgtgatatatttcataaaatcttacctatgaaaagcaaaggcatttctgta |
36516095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 36805215 - 36805131
Alignment:
| Q |
268 |
ctttgatgagtaataaaatccttctctctcatga-----tatagttcataaaatcttacctatgaaaagcaaatgcatttctgta |
347 |
Q |
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| T |
36805215 |
ctttgatgagtaataaaatccttatctctcatgaattgatatagttcataaaatcttacctatgaaaagcaaaggcatttctgta |
36805131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 36515898 - 36515934
Alignment:
| Q |
222 |
ttgttacgttctccctaggttgcaggttcgattctcc |
258 |
Q |
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| T |
36515898 |
ttgttacgttctccctaggttgcaggttcgattctcc |
36515934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 38629037 - 38629182
Alignment:
| Q |
22 |
gataggtatattaaattaattgatatgaatttccaatattgaccttataatattgatacctacaaatatgtaaataaattattaaaagtattactataaa |
121 |
Q |
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| T |
38629037 |
gatagggatattaaattaattaatttgaatttccgatattgatcatataatattgatacctacaaatatgtaaataaattattaaaagtattactataaa |
38629136 |
T |
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| Q |
122 |
acatattacctcatacaataggtaagaaatagcacaacaacatgcta |
168 |
Q |
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| T |
38629137 |
acatattacctcctacaatagg-cggaaatagtacaacaacttgcta |
38629182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 25377324 - 25377279
Alignment:
| Q |
61 |
tgaccttataatattgatacctacaaatatgtaaataaattattaa |
106 |
Q |
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| T |
25377324 |
tgaccttgtaatattgataccaacaaatatgtgaataaatcattaa |
25377279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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