View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_15 (Length: 363)
Name: NF9592_low_15
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 112 - 353
Target Start/End: Original strand, 53660244 - 53660485
Alignment:
| Q |
112 |
aacaagagagatggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgnnnnnnnctaaaattcatgttagct |
211 |
Q |
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| T |
53660244 |
aacaagagagagggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgaaaaaaactaaaattcatgttagct |
53660343 |
T |
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| Q |
212 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaacttgtctaggttcgtcttaaacttcctcatccaaacct |
311 |
Q |
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| T |
53660344 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaactagtctaggttcgtcttaaacttcctcatccaaacct |
53660443 |
T |
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| Q |
312 |
gtaggttatacatttaaaaatttagaagtaaccaaccctatg |
353 |
Q |
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| T |
53660444 |
gtaggttatacattttaaaatttagaagtaaccaaccctatg |
53660485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 53660110 - 53660208
Alignment:
| Q |
17 |
aaaagaggaaagaacaagacacaaaagtttacgcgatttggtcaatgtgacctatgtcacnnnnnnntcagtgagatacttatttcgttaggacgaaca |
115 |
Q |
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| T |
53660110 |
aaaagaggaaagaacaagacacaaaagtttacgcgatttggtcaatgtgacctacgtcacaaagaaatcagtgagatacttatttcgttaggacgaaca |
53660208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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