View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_17 (Length: 358)
Name: NF9592_low_17
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 47470312 - 47469986
Alignment:
| Q |
14 |
caaaggaggaatagcaccttcacgacacaccattacacgataactcacattctcttcacaaatcttcaacaaaatcgccgccgcaatttccttatgtctc |
113 |
Q |
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| T |
47470312 |
caaaggaggaatagcaccttcacgacacaccattacacgataactcacattctcttcacaaatcttcaacaaaatcgccgccgcaatttccttctgtctc |
47470213 |
T |
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| Q |
114 |
tgcgtcccaacctccacaatctccaccaacaccggtatccctccttcctccaccaaagccgttctcgcctccgtaaccgtcaccaacacgctcatcacat |
213 |
Q |
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| T |
47470212 |
tgcgtcccaacctccacaatctccaccaacaccggtatccctccttcctccgccaaagccgttctcgcctccgtaaccgtcaccaacacgctcatcacat |
47470113 |
T |
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| Q |
214 |
acgctgacttatccaccatgttcgaatcaaaatccgccattaattcaactaaaggcttcattattccagcttttatcgctctgattttgttctccttcac |
313 |
Q |
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| T |
47470112 |
acgctgacttatccaccatgttcgaatcaaaatccgccattaattcaactaaaggcttcattattccagcttttatcgctctgattttgttctcgttcac |
47470013 |
T |
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| Q |
314 |
cgaacacagcgagtatagagccgttga |
340 |
Q |
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| T |
47470012 |
cgaacacagcgagtataaagccgttga |
47469986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 322
Target Start/End: Original strand, 5220515 - 5220771
Alignment:
| Q |
66 |
tcttcacaaatcttcaacaaaatcgccgccgcaatttccttatgtctctgcgtcccaacctccacaatctccaccaacaccggtatccctccttcctcca |
165 |
Q |
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| T |
5220515 |
tcttcacaaatctgtaacagaataaccgccgcaatttccttctgtctctgcgatccaacctccacaatctcaaccaacaccggcacaccaccttcctcca |
5220614 |
T |
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| Q |
166 |
ccaaagccgttctcgcctccgtaaccgtcaccaacacgctcatcacatacgctgacttatccaccatgttcgaatcaaaatccgccattaattcaactaa |
265 |
Q |
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|||| || ||||||||| |||| ||||| || |||| ||||| || || ||||||||||| ||||| |||||||||||||| || ||||| || |
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| T |
5220615 |
ccaacgcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaatccgccatcaactcaaccaa |
5220714 |
T |
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| Q |
266 |
aggcttcattattccagcttttatcgctctgattttgttctccttcaccgaacacag |
322 |
Q |
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| T |
5220715 |
caccttcattatccccgctttcaccgctctcatcttattctccttcacagaacacag |
5220771 |
T |
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