View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_18 (Length: 339)
Name: NF9592_low_18
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_18 |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0208 (1 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 17594631 - 17594934
Alignment:
| Q |
17 |
aatcgggactcggatgaacactcaaacatgcaaccgcaacaacgtcacccacaactcaagagatggcgcaagaaggagggcgacataccaggctctatca |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17594631 |
aatcgggactcggatgaacactcaaacacgcaaccgcaacagtgtcacccacgactcaagacatggcgcaagaaggagggcgacataccaggctctatca |
17594730 |
T |
|
| Q |
117 |
ttgacagcaaagctcaacgagaacaacataccagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctc |
216 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17594731 |
ttgacagcaaagctcgacgagaacaacataccagcaagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctc |
17594830 |
T |
|
| Q |
217 |
atctccatcagcctggttatcggtaaatgaagtggaatgtgtggctttctctcaacgccaacgacgtcacaaagatccgaccgacagtggagctcaattc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17594831 |
atctccatcagcctggttatcggtaaatgaagtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattc |
17594930 |
T |
|
| Q |
317 |
gtca |
320 |
Q |
| |
|
|||| |
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|
| T |
17594931 |
gtca |
17594934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 26906207 - 26906077
Alignment:
| Q |
17 |
aatcgggactcggatgaacactcaaacatgcaaccgcaacaacgtcacccacaactcaagagatggcgcaagaaggagggcgacataccaggctctatca |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26906207 |
aatcgggactcggatgaacactcaaacacacaaccgcaacagcgtcacccacgactcaagagatggcgcaagaaggagggcgacataccaggctctatca |
26906108 |
T |
|
| Q |
117 |
ttgacagcaaagctcaacgagaacaacatac |
147 |
Q |
| |
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||||||||||||||| ||||||||||||||| |
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|
| T |
26906107 |
ttgacagcaaagctcgacgagaacaacatac |
26906077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 148 - 320
Target Start/End: Original strand, 31710259 - 31710431
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31710259 |
cagcaagggtgttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagctcggttatcggtaaatgaa |
31710358 |
T |
|
| Q |
248 |
gtggaatgtgtggctttctctcaacgccaacgacgtcacaaagatccgaccgacagtggagctcaattcgtca |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
31710359 |
gtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattcgtca |
31710431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 14674629 - 14674717
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttat |
236 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||| || |||||| |
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| T |
14674629 |
cagcaaggttgttgtacttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttat |
14674717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 20133962 - 20133873
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
237 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||| || ||||||| |
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| T |
20133962 |
cagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
20133873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 17535348 - 17535285
Alignment:
| Q |
185 |
cctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaag |
248 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||| |||||||||| || ||||||| |
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| T |
17535348 |
cctcaagattcaactaacaagctcaatttctcatctccatcgtcctggttatcagtgaatgaag |
17535285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 148 - 320
Target Start/End: Complemental strand, 4281629 - 4281457
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaa |
247 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4281629 |
cagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaatgaa |
4281530 |
T |
|
| Q |
248 |
gtggaatgtgtggctttctctcaacgccaacgacgtcacaaagatccgaccgacagtggagctcaattcgtca |
320 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
4281529 |
gtgtagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggaggtcaattcgtca |
4281457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 8165893 - 8166073
Alignment:
| Q |
151 |
caagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaa------- |
243 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||| || || ||||||||||||| |
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|
| T |
8165893 |
caagggcgttgtatttcctaagtaattttcagggcctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatcggtaaaggaagtg |
8165992 |
T |
|
| Q |
244 |
----tgaagtggaatgtgtggctttctctcaacgccaacgacgtcacaaagatccgaccgacagtggagctcaattcgtca |
320 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||| |||||| || |||||||||||| |||||||||| |
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|
| T |
8165993 |
gaatggaagtggaatgtgcggctttctctcaacaccaacgacgtcacgaagatctgatcgacagtggagcccaattcgtca |
8166073 |
T |
|
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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 12325802 - 12325891
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
237 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || ||||||| |
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|
| T |
12325802 |
cagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
12325891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 320
Target Start/End: Original strand, 11203500 - 11203663
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaa |
247 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| || ||||| || ||||||| || | |
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|
| T |
11203500 |
cagcaaaggtattgtacttcctaagtaattttcagggcctcaagattcaacaaatgaactcaacttctcccctacatcaacccggttatc-----at-ca |
11203593 |
T |
|
| Q |
248 |
gtggaatgtgtggctttctctcaacgccaacgacgtcacaaagatccgaccgacagtggagctcaattcgtca |
320 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||| ||||||| | | |||| |||||||||||||||| |
|
|
| T |
11203594 |
gtgaaatgtatggctttctctcaacgccaacgacgtc---aagatccaatcaacagaggagctcaattcgtca |
11203663 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 47908 - 47997
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
237 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || ||||||| |
|
|
| T |
47908 |
cagcaagagtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
47997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 44358109 - 44358198
Alignment:
| Q |
148 |
cagcaagggtgttgtacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
237 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||| || ||||||| |
|
|
| T |
44358109 |
cagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
44358198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 383 - 331
Alignment:
| Q |
185 |
cctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
237 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
383 |
cctcaagattcaacaaacaaactcaatttctcatctccatcgtcctggttatc |
331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 17373 - 17323
Alignment:
| Q |
270 |
aacgccaacgacgtcacaaagatccgaccgacagtggagctcaattcgtca |
320 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
17373 |
aacgccaacgacgtcacgaagatacgaccgacagtggagttcaattcgtca |
17323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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