View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_2 (Length: 451)
Name: NF9592_low_2
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 4328723 - 4328296
Alignment:
| Q |
1 |
cttgaatccttaaccccccaaatatgttagtttcttctttctccgtcagtttttgtggnnnnnnnaggtacttttatggacagttacatagattaatcta |
100 |
Q |
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| T |
4328723 |
cttgaatccttaaccccccaaatatgttagtttcttctttctccgtcagtttttgtggtttttttaggtacttttatggacagttacatagattaatcta |
4328624 |
T |
|
| Q |
101 |
tttatatatttagaacacacttaaactctcaactgataaaattgtgtacactaaagttagagatcaaacctc--tgtttaagagacttgctactcctcac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4328623 |
tttatatatttagaacacacttaaactctcaactgataaaattgtgtacactaaagttagagatcaaacctctatgtttaagagacttgctactcctcac |
4328524 |
T |
|
| Q |
199 |
tcgaatcaaaccacatcagtttgatagcctaaccaagaataatttaaagttacataattgaacaannnnnnnnngaataagctaaataacataattgaac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4328523 |
tcgaatcaaaccacatcagtttgatagcctaaccaagaataatttaaagttacataattgaacaatttttttttgaataagctaaataacataattgaac |
4328424 |
T |
|
| Q |
299 |
aattacatgaagttcctcttccataacttaacctttatctactcatgatgtataaacacatattaatacaaacataagaaaagaatcaccggtggatgct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
4328423 |
aattacatgaagttcctcttccataacttaacctttatctactcatgatgtataaacatatattaatacaaacataagaaaagaatcactagtggatgct |
4328324 |
T |
|
| Q |
399 |
tcctttcctccagaagtgcttcgatcac |
426 |
Q |
| |
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|||||| ||||||||||||||||||||| |
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| T |
4328323 |
tcctttgctccagaagtgcttcgatcac |
4328296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 396
Target Start/End: Original strand, 30041255 - 30041285
Alignment:
| Q |
366 |
acaaacataagaaaagaatcaccggtggatg |
396 |
Q |
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| T |
30041255 |
acaaacataagaaaagaatcaccggtggatg |
30041285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 30041209 - 30041245
Alignment:
| Q |
332 |
tttatctactcatgatgtataaacacatattaataca |
368 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
30041209 |
tttagctactcatgttgtataaacacatattaataca |
30041245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 24131738 - 24131702
Alignment:
| Q |
332 |
tttatctactcatgatgtataaacacatattaataca |
368 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||| |
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| T |
24131738 |
tttacctactcatgatgtataaacacacattaataca |
24131702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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