View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9592_low_24 (Length: 300)

Name: NF9592_low_24
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9592_low_24
NF9592_low_24
[»] chr8 (2 HSPs)
chr8 (11-285)||(11402816-11403091)
chr8 (34-104)||(11402306-11402376)
[»] chr5 (2 HSPs)
chr5 (41-246)||(35841855-35842060)
chr5 (41-246)||(12528962-12529167)
[»] chr2 (2 HSPs)
chr2 (41-246)||(42913075-42913280)
chr2 (34-246)||(42300721-42300933)
[»] chr1 (1 HSPs)
chr1 (41-246)||(29282216-29282421)
[»] chr4 (3 HSPs)
chr4 (41-246)||(27730175-27730380)
chr4 (41-246)||(45966142-45966347)
chr4 (41-250)||(24146874-24147083)
[»] chr6 (1 HSPs)
chr6 (41-246)||(29303875-29304080)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 11403091 - 11402816
Alignment:
Q  11 gcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11403091 gcaaaggatgtatcgaaagtcatgtcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 11402992  T
Q  110 tgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402991 tgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaaga 11402892  T
Q  210 ggatgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttctaccaac 285  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402891 ggacgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttctaccaac 11402816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 11402306 - 11402376
Alignment:
Q  34 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataac 104  Q
    |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| || |||||| ||||||||    
T  11402306 tcaacagaatattgcagaagacagagaaagcaaaggaggaagccttgaaaagtcaagtgaacttcaataac 11402376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 35841855 - 35842060
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  35841855 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 35841954  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  35841955 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 35842054  T
Q  241 ataatt 246  Q
    | ||||    
T  35842055 acaatt 35842060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 12529167 - 12528962
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||  | | |  |    
T  12529167 aatattggagaatactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaaggcagaact 12529068  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
    ||||| |||||||||||||||||||||  ||  || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  12529067 cgtgacaatttcaacaatggaggaagaggaagtttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 12528968  T
Q  241 ataatt 246  Q
    | ||||    
T  12528967 acaatt 12528962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 42913280 - 42913075
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  42913280 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 42913181  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  42913180 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 42913081  T
Q  241 ataatt 246  Q
    | ||||    
T  42913080 acaatt 42913075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 42300721 - 42300933
Alignment:
Q  34 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagag 133  Q
    |||||| |||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||| ||| ||| ||||||| || ||| ||| ||       
T  42300721 tcaacagaatattggagaagagtgaaaatgtaaaggaggaagccttgaagagccaggtgaacctcaacaacattgttgaatccagtcagatgggtgaagc 42300820  T
Q  134 taaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatgg 233  Q
     | || |||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | ||||||    
T  42300821 cagagctcgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatgg 42300920  T
Q  234 agagacaataatt 246  Q
    |||||||| ||||    
T  42300921 agagacaacaatt 42300933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 29282421 - 29282216
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  29282421 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 29282322  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  29282321 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 29282222  T
Q  241 ataatt 246  Q
    | ||||    
T  29282221 acaatt 29282216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 27730380 - 27730175
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  27730380 aatattggaaaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 27730281  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  27730280 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 27730181  T
Q  241 ataatt 246  Q
    | ||||    
T  27730180 acaatt 27730175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 45966142 - 45966347
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | |  |    
T  45966142 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagaact 45966241  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  45966242 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 45966341  T
Q  241 ataatt 246  Q
    | ||||    
T  45966342 acaatt 45966347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 24146874 - 24147083
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||| ||| | |||||  ||||| ||| ||    | ||      
T  24146874 aatattggataagactgaaaaagtaaaggaggaagccttgaagagccaggtgaagctcaacaacattgtttaatccaattagatgggtgaagccagagaa 24146973  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
     |||| |||||||||| ||||  ||||  ||| || |||| || |||| ||||||| ||||||||||||||| |||| |||||| | |||||||||||||    
T  24146974 tgtgacaatttcaacattggattaagaggaaatttcagagttaaaggtcgaggaacctttagaggaagaggacgtggcaacttcaaccaatggagagaca 24147073  T
Q  241 ataatttcaa 250  Q
    | ||||||||    
T  24147074 acaatttcaa 24147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 29303875 - 29304080
Alignment:
Q  41 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 140  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||   || |  |    
T  29303875 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagctagaact 29303974  T
Q  141 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 240  Q
    ||||| |||||||||||||||||||||  ||  || ||||| |||| | ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  29303975 cgtgacaatttcaacaatggaggaagaggaagtttcagaggaagagatcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 29304074  T
Q  241 ataatt 246  Q
    | ||||    
T  29304075 acaatt 29304080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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