View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_25 (Length: 292)
Name: NF9592_low_25
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 4550860 - 4550592
Alignment:
| Q |
19 |
tcatctgctcgtcaaaatgtgtttttccattaacctaggtgcctgatatttataggcgagtgtttccctaatttttagggtaagttggttcgtgttacga |
118 |
Q |
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| T |
4550860 |
tcatctgctcgtcaaaatgtgtttttccattaacctaggtgcctgatatttataggcgagtgtttccctaatttttagggtaagttggttcgtgttacga |
4550761 |
T |
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| Q |
119 |
gataggcagtgagctttcttttggaatgtcgttctattctcaccatgcgggtttgtagcccacaatatgagatagataatggtgatcacatcgatttcta |
218 |
Q |
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| T |
4550760 |
gataggcagtgagctttcttttggcatgtcgttctattctcaccatgcgggtttgtagcccacaatatgagatagataatggtgatcacatcgatttcta |
4550661 |
T |
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| Q |
219 |
atcgtgtcttgtgatgtggtgtacgtagcccgcgatgcaagattgacagtagctgactcctttgcttct |
287 |
Q |
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| T |
4550660 |
atcgtgtctcgtgatgtggcgtacgtagcccgtgatgcaagattgacagtaactgactcctttgtttct |
4550592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 280
Target Start/End: Original strand, 3092358 - 3092520
Alignment:
| Q |
118 |
agataggcagtgagctttcttttggaatgtcgttctattctcaccatgcgggtttgtagcccacaatatgagatagataatggtgatcacatcgatttct |
217 |
Q |
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| T |
3092358 |
agataggtagtgagatttcttttggcatgtcattctattctcacgatgcggatttgtagcccacaatacgagataggtagtagcgatcacattgatttcc |
3092457 |
T |
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| Q |
218 |
aatcgtgtcttgtgatgtggtgtacgtagcccgcgatgcaagattgacagtagctgactcctt |
280 |
Q |
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| T |
3092458 |
aatcgtgtctcgcgatgcggggtatgtagcctgcgatgcaagattgacaatagctgactcctt |
3092520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 3092247 - 3092329
Alignment:
| Q |
26 |
ctcgtcaaaatgtgtttttccattaacctaggtgcctgatatttataggcgagtgtttccctaatttttagggtaagttggttc |
109 |
Q |
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| T |
3092247 |
ctcgtcaaaaagtatttttccattgacctgggtgcctaatatttataggtgagtg-ttccctattttttagggtaagttggttc |
3092329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 36921911 - 36921986
Alignment:
| Q |
22 |
tctgctcgtcaaaatgtgtttttccattaacctaggtgcctgatatttataggcgagtgtttccctaatttttagg |
97 |
Q |
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| T |
36921911 |
tctgcttgtcaaaaggtgtttttccactaacctaggtgcttgatatatatatgcgagtgttacactaaattttagg |
36921986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 20014522 - 20014474
Alignment:
| Q |
38 |
tgtttttccattaacctaggtgcctgatatttataggcgagtgtttccc |
86 |
Q |
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| T |
20014522 |
tgtttttccactaacctaggtttctaatatttataggcgagtgtttccc |
20014474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 7783756 - 7783787
Alignment:
| Q |
65 |
tatttataggcgagtgtttccctaatttttag |
96 |
Q |
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| T |
7783756 |
tatttataggcgagtgtttccctaatttttag |
7783787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 36644415 - 36644479
Alignment:
| Q |
22 |
tctgctcgtcaaaatgtgtttttccattaacctaggtgcctgatatttataggcgagtgtttccc |
86 |
Q |
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|||||||||||||| ||| |||| |||| ||||||||| || |||| ||||||||| |||||||| |
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| T |
36644415 |
tctgctcgtcaaaaggtgatttttcattgacctaggtgtctaatatatataggcgaatgtttccc |
36644479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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