View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_26 (Length: 286)
Name: NF9592_low_26
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 2592172 - 2591911
Alignment:
| Q |
16 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592172 |
gatgttctaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
2592073 |
T |
|
| Q |
116 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2592072 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtgaaaaatctgttcctaatgg |
2591973 |
T |
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| Q |
216 |
tttccaatgttcgtagggtttcatcttcatgtgaaaggttc-aagccatacgagtacctatg |
276 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
2591972 |
tttccaatgttcatagagtttcatcttcatgtgaaaggttcaaagccatacgagtacttatg |
2591911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 2578423 - 2578180
Alignment:
| Q |
16 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578423 |
gatgttctaggacttgttaatgttattgttggaagtcctgcttcaagcaactgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
2578324 |
T |
|
| Q |
116 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
215 |
Q |
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| T |
2578323 |
tttgtaccgctattaaggctaacgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
2578224 |
T |
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| Q |
216 |
tttccaatgttcgtagggtttcatcttcatgtgaaaggttcaagccatac |
265 |
Q |
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|||||||||||| ||| || ||||||||||||||||||||||||| |
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| T |
2578223 |
tttccaatgttcatagagt------ttcatgtgaaaggttcaagccatac |
2578180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 2599926 - 2599683
Alignment:
| Q |
16 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
115 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599926 |
gatgttctaggacttgttaatgttattgttggaattcctgcttcaagcaattgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
2599827 |
T |
|
| Q |
116 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599826 |
tttgtaccgctattaaggctaacgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
2599727 |
T |
|
| Q |
216 |
tttccaatgttcgtagggtttcatcttcatgtgaaaggttcaagccatac |
265 |
Q |
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|||||||||||| ||| || ||||||||||||||||||||||||| |
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| T |
2599726 |
tttccaatgttcatagagt------ttcatgtgaaaggttcaagccatac |
2599683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 2608462 - 2608251
Alignment:
| Q |
16 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||| || |||||| |||| | |
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| T |
2608462 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcc |
2608363 |
T |
|
| Q |
116 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
215 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||| || |
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| T |
2608362 |
tttgtactgctattaaggctaatgttcttggtatcaacttgaatgttcctatcacactcagtctcctacttagtgcttgtgaaaaatctgttccttcagg |
2608263 |
T |
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| Q |
216 |
tttccaatgttc |
227 |
Q |
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|||||||||||| |
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| T |
2608262 |
tttccaatgttc |
2608251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 49329036 - 49329233
Alignment:
| Q |
31 |
gttaatgttattgttggaagtcctgcttca---agcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgcta |
127 |
Q |
| |
|
||||||||| || |||||| |||| ||||| || ||||||||| |||||||| | ||||||||||||||||| || ||| |||||||||| || || |
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| T |
49329036 |
gttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtctttgcactgcac |
49329135 |
T |
|
| Q |
128 |
ttaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgt |
225 |
Q |
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|||||||||| || ||||| |||||| ||||||||||| |||| || || | || |||||||| ||||||||| | || ||| ||||||||||||| |
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| T |
49329136 |
ttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggtttccaatgt |
49329233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 49331297 - 49331442
Alignment:
| Q |
16 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttca---agcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagttt |
112 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||||||| || || |||||| || | || ||||||||||||||||||| || ||| ||| |
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| T |
49331297 |
gatgttttaggactggttaatgttgttgttggaaatcctgcttcaggtagtaattgttgtgcaataatcaaaggtttggctgatttggatgctgcacttt |
49331396 |
T |
|
| Q |
113 |
gtctttgtaccgctattaaggctaatgttcttggtatcaacttgaa |
158 |
Q |
| |
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||||||| || || |||||||| ||||| ||||| || |||||||| |
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| T |
49331397 |
gtctttgcactgcaattaaggccaatgtgcttggaataaacttgaa |
49331442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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