View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9592_low_27 (Length: 275)
Name: NF9592_low_27
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_27 |
 | |
|
| [»] scaffold0838 (1 HSPs) |
| | |
|
| [»] scaffold0832 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 15142399 - 15142274
Alignment:
| Q |
32 |
tgtggttaatctatggtgatgctaaaatagaataactattagattgtggaattcagttagttagaataaatcctagagtttagggtaactaactttggtt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15142399 |
tgtggttaatctatggtgatgctaaaatagaataactattagattgtggaattcagttagttagaataaatcctagagtttagggtaactaactttggtt |
15142300 |
T |
|
| Q |
132 |
agcttgttaaccaagttagaaagttt |
157 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15142299 |
agcttgttaaccaagttagaaagttt |
15142274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 8725784 - 8725878
Alignment:
| Q |
68 |
tattagattgtggaattcagtt-agttagaa--taaatcctagagtttagggtaactaactttggttagcttgttaaccaagttagaaagtttgtt |
160 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8725784 |
tattagattgtg-aattcagtttagttagaaaataaatcctagagtttagggtaacttactttggttagcttgttaaccaagttagaaagtttgtt |
8725878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 8725893 - 8725944
Alignment:
| Q |
152 |
aagtttgttacaaaatctctctgtatataagcttctcattgcttgtaaatat |
203 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
8725893 |
aagtttgttaaaaaacctctttgtatataagcttctcaatgcttgtaaatat |
8725944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34842549 - 34842577
Alignment:
| Q |
1 |
aaaataagccaatccaaacggggctaaaa |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34842549 |
aaaataagccaatccaaacggggctaaaa |
34842577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0838 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0838
Description:
Target: scaffold0838; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 2149 - 2061
Alignment:
| Q |
68 |
tattagattgtggaattcagttagttagaataaatcctagagtttagggtaactaactttggttagcttgttaaccaagttagaaagtt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2149 |
tattagattgtggaattcagttagttagaataattcttagagtttatggtaactaactttggttagcttgttaaccaagttagaaagtt |
2061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0832 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0832
Description:
Target: scaffold0832; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 2180 - 2092
Alignment:
| Q |
68 |
tattagattgtggaattcagttagttagaataaatcctagagtttagggtaactaactttggttagcttgttaaccaagttagaaagtt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2180 |
tattagattgtggaattcagttagttagaataattcttagagtttatggtaactaactttggttagcttgttaaccaagttagaaagtt |
2092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 26884585 - 26884434
Alignment:
| Q |
68 |
tattagattgtggaattcagtt-agttagaataaatcctagagtttagggtaactaactttggttagcttgttaaccaagttaga--------------- |
151 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26884585 |
tattagattgtaaaattcagtttagttagaataaaccctagattttagggtaactaacttcggttagcttgttaaccaagttagagagatagttttagag |
26884486 |
T |
|
| Q |
152 |
aagtttgttacaaaatctctctgtatataagcttctcattgcttgtaaatat |
203 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26884485 |
aagtttgttacaaaacctctttgtatataagcttctcaatgcttgtaaatat |
26884434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University