View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9592_low_28 (Length: 265)
Name: NF9592_low_28
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39230103 - 39230347
Alignment:
| Q |
1 |
ctcatttggcacaaggatatctcaccttcaaaatcttttcttgctttgaaattaatgcatgacaaattgcccatcgatgaacaccttagtgaaagaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230103 |
ctcatttggcacaaggatatctcagcttcaaaatcttttcttgctttgaaattaatgcatgacaaattgcccatcgatgaacaccttagtgaaagaggtt |
39230202 |
T |
|
| Q |
101 |
gttatctaccatctataggta--acttgtgtccaaaggaagctcaaactagcacatatatcttcactgctccattggcaatattgatggagttaaacatt |
198 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230203 |
gttatctaccatctatatgtataacttgtgtccaaaggaagctcaaactagcacatatatcttcactgctccattggcaatattgatggagttaaacatt |
39230302 |
T |
|
| Q |
199 |
gatggagttgctttgtatttctactgctccattggcaaaactctt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230303 |
gatggagttgctttgtatttctactgctccattggcaaaactctt |
39230347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University