View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9592_low_30 (Length: 258)

Name: NF9592_low_30
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9592_low_30
NF9592_low_30
[»] chr8 (10 HSPs)
chr8 (19-248)||(548712-548941)
chr8 (72-248)||(23423716-23423892)
chr8 (72-248)||(894464-894640)
chr8 (72-216)||(906003-906147)
chr8 (130-216)||(1963481-1963567)
chr8 (143-193)||(566327-566377)
chr8 (19-48)||(23423687-23423716)
chr8 (136-216)||(2014862-2014942)
chr8 (136-216)||(2018245-2018325)
chr8 (136-216)||(2436899-2436979)
[»] scaffold0428 (1 HSPs)
scaffold0428 (139-216)||(1348-1425)
[»] chr6 (4 HSPs)
chr6 (135-216)||(845020-845101)
chr6 (135-216)||(870304-870385)
chr6 (139-216)||(33257230-33257307)
chr6 (73-216)||(8294448-8294591)
[»] scaffold0184 (1 HSPs)
scaffold0184 (139-215)||(15200-15276)
[»] scaffold0078 (1 HSPs)
scaffold0078 (139-215)||(57568-57644)
[»] chr7 (1 HSPs)
chr7 (176-216)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (136-216)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 548941 - 548712
Alignment:
Q  19 ctgcttattttagtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccattaggtttcttggaaaggactaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548941 ctgcttattttagtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccattaggtttcttggaaaggactaa 548842  T
Q  119 agatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548841 agatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagt 548742  T
Q  219 ttagagggtttagtttatggtgtgcctatg 248  Q
    ||||||||||||||||||||||||||||||    
T  548741 ttagagggtttagtttatggtgtgcctatg 548712  T

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Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 23423716 - 23423892
Alignment:
Q  72 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423716 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 23423815  T
Q  172 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423816 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 23423892  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 72 - 248
Target Start/End: Complemental strand, 894640 - 894464
Alignment:
Q  72 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 171  Q
    |||||||||||| |||||||||||   |||||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  894640 gatgatccattagattatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 894541  T
Q  172 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 248  Q
    || | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||    
T  894540 atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg 894464  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 906003 - 906147
Alignment:
Q  72 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 171  Q
    |||||||||||| | |||||||||   |||||||||||||| |  |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  906003 gatgatccattagagtatttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 906102  T
Q  172 atagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    || | |||| |||||| ||||||| ||||||||||||| ||||||    
T  906103 atggatcaattggtgggtttttgagtcattgtggttggggttcaa 906147  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 1963481 - 1963567
Alignment:
Q  130 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    |||| |||||||||||||| |||||  || |||| |||||||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaa 1963567  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 566377 - 566327
Alignment:
Q  143 atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt 193  Q
    |||||| |||||||||||||||||| |||||||||||| || ||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt 566327  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 23423687 - 23423716
Alignment:
Q  19 ctgcttattttagtggatcttcaaaaaagg 48  Q
    ||||||||||||||||||||||||||||||    
T  23423687 ctgcttattttagtggatcttcaaaaaagg 23423716  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 2014942 - 2014862
Alignment:
Q  136 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2014942 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2014862  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 2018325 - 2018245
Alignment:
Q  136 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2018325 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2018245  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 2436899 - 2436979
Alignment:
Q  136 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    ||||||||||||| ||||| ||| |||| |||||||| || |||  ||||||||| |||| ||| ||||| |||| |||||    
T  2436899 ttccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaa 2436979  T

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Target: scaffold0428 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 1348 - 1425
Alignment:
Q  139 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  1348 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 1425  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 845101 - 845020
Alignment:
Q  135 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  845101 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 845020  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 870385 - 870304
Alignment:
Q  135 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 870304  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 33257230 - 33257307
Alignment:
Q  139 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  33257230 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 33257307  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 8294591 - 8294448
Alignment:
Q  73 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 172  Q
    ||||||||||| | |||||||||   ||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  8294591 atgatccattagagtatttaccaaatggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 8294492  T
Q  173 tagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    | | |||| |||||| ||||| | ||||||||||||||||||||    
T  8294491 tggatcaattggtgggtttttaagtcattgtggttggagttcaa 8294448  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  139 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 215  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  139 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 215  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 41511443 - 41511483
Alignment:
Q  176 ttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    ||||| |||||| |||||||||||||||||||||| |||||    
T  41511443 ttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 5906147 - 5906227
Alignment:
Q  136 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 216  Q
    ||||||||||||| || ||  ||||||| |||||||| |  |||  |||||| || |||| ||||||||||||||||||||    
T  5906147 ttccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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