View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9592_low_31 (Length: 250)

Name: NF9592_low_31
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9592_low_31
NF9592_low_31
[»] chr6 (7 HSPs)
chr6 (3-60)||(19748161-19748218)
chr6 (1-59)||(6228236-6228295)
chr6 (2-60)||(17217019-17217078)
chr6 (1-59)||(18903343-18903402)
chr6 (3-48)||(15716995-15717040)
chr6 (1-48)||(20415549-20415597)
chr6 (8-59)||(9763502-9763553)
[»] chr1 (12 HSPs)
chr1 (1-59)||(2017661-2017719)
chr1 (1-59)||(49239823-49239882)
chr1 (3-56)||(50065072-50065126)
chr1 (1-60)||(14262696-14262756)
chr1 (1-48)||(24134611-24134659)
chr1 (6-60)||(10123028-10123083)
chr1 (2-48)||(25031484-25031531)
chr1 (2-60)||(40061504-40061563)
chr1 (5-60)||(47651936-47651991)
chr1 (1-59)||(49620032-49620091)
chr1 (5-48)||(12148560-12148604)
chr1 (12-48)||(50593500-50593536)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-60)||(419772-419832)
[»] chr7 (9 HSPs)
chr7 (1-60)||(38378279-38378339)
chr7 (1-59)||(48433686-48433745)
chr7 (4-59)||(4956068-4956124)
chr7 (1-59)||(28914853-28914912)
chr7 (1-59)||(31793528-31793587)
chr7 (1-58)||(23824569-23824627)
chr7 (5-57)||(48619860-48619913)
chr7 (1-36)||(40273881-40273917)
chr7 (5-48)||(43440753-43440797)
[»] chr2 (5 HSPs)
chr2 (1-60)||(34107554-34107614)
chr2 (1-60)||(3330176-3330236)
chr2 (5-59)||(41541516-41541571)
chr2 (1-60)||(41750007-41750066)
chr2 (1-36)||(42678323-42678359)
[»] chr8 (9 HSPs)
chr8 (1-60)||(1360110-1360169)
chr8 (6-60)||(38289210-38289265)
chr8 (1-48)||(43456640-43456687)
chr8 (7-60)||(10162036-10162089)
chr8 (3-48)||(13906608-13906653)
chr8 (1-60)||(4259919-4259979)
chr8 (1-60)||(22652743-22652803)
chr8 (6-60)||(11052559-11052614)
chr8 (6-59)||(43413862-43413916)
[»] chr5 (8 HSPs)
chr5 (1-51)||(43227926-43227977)
chr5 (3-48)||(12375394-12375439)
chr5 (3-48)||(15696274-15696319)
chr5 (1-60)||(17077421-17077481)
chr5 (1-48)||(31250207-31250255)
chr5 (6-60)||(3867729-3867783)
chr5 (1-45)||(38503247-38503292)
chr5 (5-60)||(15470596-15470652)
[»] chr4 (14 HSPs)
chr4 (1-59)||(11491195-11491254)
chr4 (3-48)||(13210146-13210191)
chr4 (1-60)||(16556511-16556571)
chr4 (1-48)||(40406947-40406995)
chr4 (1-39)||(23449033-23449071)
chr4 (1-58)||(37889583-37889641)
chr4 (1-48)||(36993101-36993149)
chr4 (1-36)||(43362167-43362203)
chr4 (1-40)||(44251322-44251362)
chr4 (1-60)||(45355693-45355752)
chr4 (1-60)||(45369434-45369493)
chr4 (1-36)||(45847925-45847961)
chr4 (1-36)||(46283182-46283218)
chr4 (1-60)||(48404112-48404172)
[»] chr3 (13 HSPs)
chr3 (1-59)||(47864696-47864755)
chr3 (3-48)||(36590458-36590503)
chr3 (1-48)||(29645814-29645862)
chr3 (5-59)||(33528181-33528236)
chr3 (3-36)||(30162724-30162757)
chr3 (1-45)||(50381774-50381819)
chr3 (1-48)||(985906-985954)
chr3 (1-60)||(27394567-27394627)
chr3 (1-48)||(27471564-27471612)
chr3 (1-60)||(27817043-27817103)
chr3 (9-60)||(32421416-32421468)
chr3 (5-48)||(38668192-38668236)
chr3 (1-48)||(39739334-39739382)
[»] scaffold0018 (1 HSPs)
scaffold0018 (3-48)||(121781-121826)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 19748161 - 19748218
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||    
T  19748161 cggacaccccacttattcattttaaggtgaatttctctgaccactaggctacttgaca 19748218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6228295 - 6228236
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  6228295 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 6228236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 17217019 - 17217078
Alignment:
Q  2 ccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  17217019 ccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 17217078  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18903402 - 18903343
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  18903402 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 18903343  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 15717040 - 15716995
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  15717040 cggacacctcacttattcattttaaggtgaatttctctagccacta 15716995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20415597 - 20415549
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  20415597 cccggacaccccacttattcatctttaaggtgaatttctctagccacta 20415549  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 9763502 - 9763553
Alignment:
Q  8 accccacttattcattttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  9763502 accccacttattcactttaaggtgaatttctctagccactatgctacttgac 9763553  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2017719 - 2017661
Alignment:
Q  1 cccggacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||  ||||||||    
T  2017719 cccggacaccccacttgttcattttaaggtgaatttctctagccactaaactacttgac 2017661  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 49239882 - 49239823
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| |||||||| ||||| ||| ||||||||| ||||||||    
T  49239882 cccggacaccccacttattcatctttaaggtaaatttctctagccactaagctacttgac 49239823  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 50065072 - 50065126
Alignment:
Q  3 cggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtactt 56  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||    
T  50065072 cggacaccccacttattcatctttaaggtgaatttctctagccactaagctactt 50065126  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14262756 - 14262696
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||||||| || ||||||    
T  14262756 cccggacaccctacttattcatctttaaggtgaatttctctagccactaagctatttgaca 14262696  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24134659 - 24134611
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  24134659 cccggacaccccacttattcatctttaaggtgaatttctctagccacta 24134611  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 10123083 - 10123028
Alignment:
Q  6 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  10123083 acaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 10123028  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 25031531 - 25031484
Alignment:
Q  2 ccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  25031531 ccggacaccccacttattcatctttaaggtgaatttctctagccacta 25031484  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 40061504 - 40061563
Alignment:
Q  2 ccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||||||||||| ||||||||| |||| ||| ||||||| | |||||||||    
T  40061504 ccggacaccccacttattcatctttaaggtggatttctctagccactaggctacttgaca 40061563  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 47651936 - 47651991
Alignment:
Q  5 gacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||  | |||||||||    
T  47651936 gacatcccacttattcattttaaggtgaatttctctagccactgggctacttgaca 47651991  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49620032 - 49620091
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| ||||| |||||||| ||| ||||||| | ||||||||    
T  49620032 cccggacaccccacttattcatctttaaagtgaatttctctagccactaggctacttgac 49620091  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 12148604 - 12148560
Alignment:
Q  5 gacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||    
T  12148604 gacaccccacttattcatctttaaggtgaatttctctggacacta 12148560  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 50593536 - 50593500
Alignment:
Q  12 cacttattcattttaaggtgaatttttctggccacta 48  Q
    ||||||||||||||||||||||||||| | |||||||    
T  50593536 cacttattcattttaaggtgaatttttttagccacta 50593500  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 419772 - 419832
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  419772 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 419832  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38378279 - 38378339
Alignment:
Q  1 cccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||||||||||| ||||||||||||||| |||  |||||||| |||||||||    
T  38378279 cccggacaccccacttattcatttttaaggtgaatttctctacccactaagctacttgaca 38378339  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48433745 - 48433686
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  48433745 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 48433686  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 4956124 - 4956068
Alignment:
Q  4 ggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  4956124 ggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 4956068  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28914912 - 28914853
Alignment:
Q  1 cccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 59  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||| | ||||||||    
T  28914912 cccggacaccccacttattcactttaaaggtgaatttctctagccactaggctacttgac 28914853  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31793528 - 31793587
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| ||||||||| |||| ||| ||||||| | ||||||||    
T  31793528 cccggacaccccacttattcatctttaaggtggatttctctagccactaggttacttgac 31793587  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23824627 - 23824569
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttga 58  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||    
T  23824627 cccggacaccctacttattcatctttaaggtgaatttctctagccactaggttacttga 23824569  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 48619860 - 48619913
Alignment:
Q  5 gacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttg 57  Q
    ||||| |||||||||||| |||||||||||||| ||| ||||||||| ||||||    
T  48619860 gacactccacttattcatctttaaggtgaatttctctagccactaagctacttg 48619913  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40273881 - 40273917
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaattt 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  40273881 cccggacaccccacttattcatctttaaggtgaattt 40273917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 43440753 - 43440797
Alignment:
Q  5 gacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||    
T  43440753 gacaccccacttattcatctttaaggtgaatttctctagccacta 43440797  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34107554 - 34107614
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  34107554 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 34107614  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3330236 - 3330176
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||||||||||| |||||||||||||| |||  |||||||| || ||||||    
T  3330236 cccggacaccccacttattcatctttaaggtgaatttctctaaccactaagctatttgaca 3330176  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 41541571 - 41541516
Alignment:
Q  5 gacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 59  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||| | ||||||||    
T  41541571 gacaccccacttattcacttttaaggtgaatttctctggccgctaggctacttgac 41541516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41750007 - 41750066
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  41750007 cccggacaccc-acttattcatctttaaggtgaatttctctagccactaggctacttgaca 41750066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42678359 - 42678323
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaattt 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  42678359 cccggacaccccacttattcatctttaaggtgaattt 42678323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1360169 - 1360110
Alignment:
Q  1 cccggacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||||||||||||||||| |||||||| |||  |||||| | |||||||||    
T  1360169 cccggacaccccacttattcattttaaagtgaatttctctaaccactaggctacttgaca 1360110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 38289265 - 38289210
Alignment:
Q  6 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||| |||||||||    
T  38289265 acaccccacttattcatctttaaggtgaatttctctagccactaagctacttgaca 38289210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43456687 - 43456640
Alignment:
Q  1 cccggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  43456687 cccggacaccccacttattcattttaaggtgattttctctgtccacta 43456640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 10162036 - 10162089
Alignment:
Q  7 caccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||| ||||||||||||||||||||||||| ||| ||||||| | |||||||||    
T  10162036 cacctcacttattcattttaaggtgaatttctctagccactaggttacttgaca 10162089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 13906653 - 13906608
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  13906653 cggacacctcacttattcattttaaggtgaatttctctagccacta 13906608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4259919 - 4259979
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||| |||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  4259919 cccggactccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 4259979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22652743 - 22652803
Alignment:
Q  1 cccggacaccccacttattcattttaa-ggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||| |||||||| |||| ||||||||| ||| ||||||||| |||||||||    
T  22652743 cccggacaccccaattattcatgttaaaggtgaatttctctagccactaagctacttgaca 22652803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 11052614 - 11052559
Alignment:
Q  6 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  11052614 acaccccacttattcatctttaaggtgaatttctctagccactaggttacttgaca 11052559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 43413916 - 43413862
Alignment:
Q  6 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  43413916 acaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 43413862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43227926 - 43227977
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaagg 51  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  43227926 cccggacaccccacttattcatctttaaggtgaatttctctagccactaagg 43227977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 12375439 - 12375394
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  12375439 cggacacctcacttattcattttaaggtgaatttctctagccacta 12375394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 15696274 - 15696319
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  15696274 cggacacctcacttattcattttaaggtgaatttctctagccacta 15696319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17077421 - 17077481
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||||||||||| || ||||||||||| ||| ||||||| | |||||||||    
T  17077421 cccggacaccccacttattcatcttaaaggtgaatttatctagccactaggctacttgaca 17077481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31250207 - 31250255
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  31250207 cccggacaccccacttattcatctttaaggtgaatttctctagccacta 31250255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 3867783 - 3867729
Alignment:
Q  6 acaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||| ||||||| |||||||| || | |||||||| |||||||||    
T  3867783 acaccccacttatttattttaaagtgaatttctccgaccactaagctacttgaca 3867729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38503292 - 38503247
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggcca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  38503292 cccggacaccccacttattcatctttaaggtgaatttctctagcca 38503247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 15470652 - 15470596
Alignment:
Q  5 gacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||| |||||||| |||||||||||||| ||| ||||||||  |||||||||    
T  15470652 gacaccccatttattcatctttaaggtgaatttctctagccactaaactacttgaca 15470596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11491254 - 11491195
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  11491254 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 11491195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 13210191 - 13210146
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  13210191 cggacacctcacttattcattttaaggtgaatttctctagccacta 13210146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16556511 - 16556571
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||| ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  16556511 cccgaacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 16556571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40406995 - 40406947
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  40406995 cccggacaccccacttattcatctttaaggtgaatttctctagccacta 40406947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23449033 - 23449071
Alignment:
Q  1 cccggacaccccacttattcattttaaggtgaatttttc 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  23449033 cccgaacaccccacttattcattttaaggtggatttttc 23449071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37889641 - 37889583
Alignment:
Q  1 cccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttga 58  Q
    |||||||||| |||||||||| ||||||||||||||| ||| ||||||| | |||||||    
T  37889641 cccggacacctcacttattcacttttaaggtgaatttctctagccactaggctacttga 37889583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36993101 - 36993149
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    ||||||||||||| |||||||| |||||||||||||| ||| |||||||    
T  36993101 cccggacaccccaattattcatctttaaggtgaatttctctagccacta 36993149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43362203 - 43362167
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaattt 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  43362203 cccggacaccccacttattcatctttaaggtgaattt 43362167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44251362 - 44251322
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttct 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  44251362 cccggacaccccatttattcatctttaaggtgaatttttct 44251322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45355752 - 45355693
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  45355752 cccggacaccc-acttattcatctttaaggtgaatttctctagccactaggctacttgaca 45355693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45369493 - 45369434
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  45369493 cccggacaccc-acttattcatctttaaggtgaatttctctagccactaggctacttgaca 45369434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45847961 - 45847925
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaattt 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  45847961 cccggacaccccacttattcatctttaaggtgaattt 45847925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 46283182 - 46283218
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaattt 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  46283182 cccggacaccccacttattcatctttaaggtgaattt 46283218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48404172 - 48404112
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||| ||||||||||| |||||||||||||| | | ||||||| | |||||||||    
T  48404172 cccggacacctcacttattcatctttaaggtgaatttctttagccactaggctacttgaca 48404112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47864696 - 47864755
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  47864696 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 47864755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 36590458 - 36590503
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  36590458 cggacacctcacttattcattttaaggtgaatttctctagccacta 36590503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29645862 - 29645814
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  29645862 cccggacaccccacttattcatctttaaggtgaatttctctagccacta 29645814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 33528236 - 33528181
Alignment:
Q  5 gacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 59  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  33528236 gacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 33528181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 30162724 - 30162757
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaattt 36  Q
    |||||||| |||||||||||||||||||||||||    
T  30162724 cggacacctcacttattcattttaaggtgaattt 30162757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50381774 - 50381819
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggcca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  50381774 cccggacaccccacttattcatctttaaggtgaatttctctagcca 50381819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 985954 - 985906
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||| || ||||||||||| ||| |||||||    
T  985954 cccggacaccccacttattcatcttaaaggtgaatttctctagccacta 985906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27394567 - 27394627
Alignment:
Q  1 cccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||||||||||  |||||||||||||| ||| ||| ||| | |||||||||    
T  27394567 cccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctacttgaca 27394627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27471564 - 27471612
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||||||| |||||||| ||||| ||| |||||||    
T  27471564 cccggacaccccacttattcatctttaaggtaaatttctctagccacta 27471612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27817103 - 27817043
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    ||||||||||||| |||||||| |||||| ||||||| ||| ||||||| | |||||||||    
T  27817103 cccggacaccccatttattcatctttaagttgaatttctctagccactaggctacttgaca 27817043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 32421416 - 32421468
Alignment:
Q  9 ccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 60  Q
    |||||||||||||| |||||| ||||||||||| ||||||||  |||||||||    
T  32421416 ccccacttattcatctttaagatgaatttttctagccactaaactacttgaca 32421468  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 38668192 - 38668236
Alignment:
Q  5 gacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||    
T  38668192 gacaccccacttattcatctttaaggtgaatttctctagccacta 38668236  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39739334 - 39739382
Alignment:
Q  1 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 48  Q
    |||||||||| ||||||||||| |||||||||||||| ||| |||||||    
T  39739334 cccggacacctcacttattcatctttaaggtgaatttctctagccacta 39739382  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 121826 - 121781
Alignment:
Q  3 cggacaccccacttattcattttaaggtgaatttttctggccacta 48  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  121826 cggacacctcacttattcattttaaggtgaatttatctagccacta 121781  T

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