View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_39 (Length: 246)
Name: NF9592_low_39
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 2905310 - 2905096
Alignment:
| Q |
22 |
aagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaacagtgattctttcgttcannnnnn |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2905310 |
aagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaaaagtgattctttcgttcattttaa |
2905211 |
T |
|
| Q |
122 |
nnnnnnnnnnnnnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgcnnnnnnnncagattcattggtta |
221 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2905210 |
gcttttttactgattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgcaaaaaaaacagattcattggtta |
2905111 |
T |
|
| Q |
222 |
aattatgatcctttg |
236 |
Q |
| |
|
||||||||||||||| |
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|
| T |
2905110 |
aattatgatcctttg |
2905096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 2853280 - 2853064
Alignment:
| Q |
22 |
aagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaacagtgattctttcgttcannnnnn |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2853280 |
aagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaaaagtgattctttcgttcattttaa |
2853181 |
T |
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| Q |
122 |
nnnnnnnnnnnnnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgc--nnnnnnnncagattcattggt |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2853180 |
gcttttttactgattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgcaaaaaaaaaacagattcattggt |
2853081 |
T |
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| Q |
220 |
taaattatgatcctttg |
236 |
Q |
| |
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||||||||||||||||| |
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| T |
2853080 |
taaattatgatcctttg |
2853064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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