View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_41 (Length: 241)
Name: NF9592_low_41
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31753114 - 31752892
Alignment:
| Q |
1 |
ttctcaaagtgatagattggtgcaactttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaacataaagtca |
100 |
Q |
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| T |
31753114 |
ttctcaaagtgatagattggtgcaactttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaacataaagcca |
31753015 |
T |
|
| Q |
101 |
cttactgggaaaaatggtgagatcaggtgcaactgcaggaaagttaaccaaatatgaatgaagaaggataaagattgatttattgtttaatataaaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31753014 |
cttactgggaaaaatggtgagatcaggtgcaattgcaggaaagttaaccaaatatgaatgaagaaggataaagattgatttattgtttaatataaagttg |
31752915 |
T |
|
| Q |
201 |
tggcaatgttttatattttcgat |
223 |
Q |
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||| ||||||||||||||||||| |
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| T |
31752914 |
tggtaatgttttatattttcgat |
31752892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31760726 - 31760506
Alignment:
| Q |
1 |
ttctcaaagtgatagattggtgcaactttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaacataaagtca |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
31760726 |
ttctcaaagtgatagattggttcaactttatagtaaaaattcttatgcttttgcttatgattttggagtttctatgattaagatgggtaacttgaagcct |
31760627 |
T |
|
| Q |
101 |
cttactgggaaaaatggtgagatcaggtgcaactgcaggaaagttaaccaaatatgaatgaagaaggataaagattgatttattgtttaatataaaattg |
200 |
Q |
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|||||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||| |
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| T |
31760626 |
cttactggtaaaaagggtgagatcaggtgcaattgcagaaaagttaaccagatatgaatgaagaaggataatgattgattaattgtttaatataaagttg |
31760527 |
T |
|
| Q |
201 |
tggcaa-tgttttatattttc |
220 |
Q |
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|| || | |||||||||||| |
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| T |
31760526 |
agggaatttttttatattttc |
31760506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 31749990 - 31750197
Alignment:
| Q |
1 |
ttctcaaagtgatagattggtgcaactttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaacataaagtca |
100 |
Q |
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||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
31749990 |
ttctcaaagtgataggttggtgcaactatatagtaaaaattcttatgcttttgcttatgattttggagtttctatgattaagatgggtaatttgaagcct |
31750089 |
T |
|
| Q |
101 |
cttactgggaaaaatggtgagatcaggtgcaactgcaggaaagttaaccaaatatgaatgaagaaggataaagattgatttattgtttaat-ataaaatt |
199 |
Q |
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||||| || ||||| |||||||| |||||||| ||||| ||||||||| | |||| |||||||||||||||||||||||| |||||||||| ||||| || |
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| T |
31750090 |
cttaccggtaaaaagggtgagataaggtgcaattgcagaaaagttaacaagatataaatgaagaaggataaagattgattaattgtttaataataaagtt |
31750189 |
T |
|
| Q |
200 |
gtggcaat |
207 |
Q |
| |
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|||||||| |
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| T |
31750190 |
gtggcaat |
31750197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 31767479 - 31767333
Alignment:
| Q |
1 |
ttctcaaagtgatagattggtgcaactttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaacataaagtca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
31767479 |
ttctcaaagtgatagattggttcaactttatagtaaaaattcttatgcttttgcatatgattttggagtttctatgattaagatgggtaacttgaagcct |
31767380 |
T |
|
| Q |
101 |
cttactgggaaaaatggtgagatcaggtgcaactgcaggaaagttaa |
147 |
Q |
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||||| |||||||| |||||||| |||||||| ||||| |||||||| |
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| T |
31767379 |
cttaccgggaaaaagggtgagataaggtgcaattgcagaaaagttaa |
31767333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 31767294 - 31767238
Alignment:
| Q |
156 |
gaatgaagaaggataaagattgatttattgtttaatataaaattgtggcaatgtttt |
212 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||| |
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| T |
31767294 |
gaatgaagaaagataaagattgattaattgtttaatataaagttgtgccaatttttt |
31767238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 14450520 - 14450554
Alignment:
| Q |
18 |
tggtgcaactttatagtaaacattctcatgctttt |
52 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
14450520 |
tggtgcaactatatagtaaacattctcatgctttt |
14450554 |
T |
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