View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_44 (Length: 241)
Name: NF9592_low_44
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37200732 - 37200955
Alignment:
| Q |
1 |
tttccaaccttacatatatttcaaacattatgaaatccaatgttctttcaaaacctcaagatatcatcatcaacaacaacaaaaacaaaagggtgaatgt |
100 |
Q |
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| T |
37200732 |
tttccaaccttacatatatttcaaacattatgaaatccaatgttctttcaaaacctcaagatatcatcatcaacaacgacaaaaacaaaagggcgaatgt |
37200831 |
T |
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| Q |
101 |
tcccttcccttgtgattgcatcaatggagagtttcttgcttatacatttctctatgagcttcagccaggagaaacatatacatcagttgcagaagagagt |
200 |
Q |
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| T |
37200832 |
tcccttcccttgtaattgcatcaatggagagtttcttgcttatacatttctctatgagcttcagccaggagaaacatatacatcagttgcagaagagagt |
37200931 |
T |
|
| Q |
201 |
ttttcaaatttgactactgatgtt |
224 |
Q |
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| T |
37200932 |
ttttcaaatttgactactgatgtt |
37200955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 37207256 - 37207319
Alignment:
| Q |
16 |
atatttcaaacattatgaaatccaatgttctttcaaaacctcaagatatcatcatcaacaacaa |
79 |
Q |
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| T |
37207256 |
atatttcaaaccttatgaaatccgaagttctttcaaaacctcaagatattatcatctacaacaa |
37207319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 37440380 - 37440466
Alignment:
| Q |
93 |
gtgaatgttcccttcccttgtgattgcatcaatggagagtttcttgcttatacatttctctatgagcttcagccaggagaaacatat |
179 |
Q |
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| T |
37440380 |
gtgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacgtttctgtacgagcttcagccaagagatacatat |
37440466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 37221325 - 37221386
Alignment:
| Q |
93 |
gtgaatgttcccttcccttgtgattgcatcaatggagagtttcttgcttatacatttctcta |
154 |
Q |
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| T |
37221325 |
gtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttggtcacacatttctcta |
37221386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 37226799 - 37226859
Alignment:
| Q |
94 |
tgaatgttcccttcccttgtgattgcatcaatggagagtttcttgcttatacatttctcta |
154 |
Q |
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| T |
37226799 |
tgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttctcta |
37226859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 37387247 - 37387195
Alignment:
| Q |
12 |
acatatatttcaaacattatgaaatccaatgttctttcaaaacctcaagatat |
64 |
Q |
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| T |
37387247 |
acatatatttcaaacatcatgcaatccaatgttgtttcaaaacctctagatat |
37387195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 37195849 - 37195894
Alignment:
| Q |
93 |
gtgaatgttcccttcccttgtgattgcatcaatggagagtttcttg |
138 |
Q |
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| T |
37195849 |
gtgaatgttccattcccttgtgattgcatccatgatgagtttcttg |
37195894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 37387135 - 37387091
Alignment:
| Q |
94 |
tgaatgttcccttcccttgtgattgcatcaatggagagtttcttg |
138 |
Q |
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|||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
37387135 |
tgaatgttccattcccttgtgattgcattaatgacgagtttcttg |
37387091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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