View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_46 (Length: 240)
Name: NF9592_low_46
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_46 |
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| [»] scaffold0716 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7745475 - 7745410
Alignment:
| Q |
1 |
agagcagttatacgtagacaaccccatgtggaggtaccactcttgtaccacccttacttgtcaatt |
66 |
Q |
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| T |
7745475 |
agagcagttatacgtagacaaccccatgtggaggtaccactcttgtaccacccttacttgtcaatt |
7745410 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 12542610 - 12542674
Alignment:
| Q |
6 |
agttatacgtagacaaccccatgtggagg----taccactcttgtaccacccttacttgtcaatt |
66 |
Q |
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| T |
12542610 |
agttatacgtagacaaccccatgtggaggtacctaccactcttgtaccacccttacttgtcaatt |
12542674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 7745286 - 7745252
Alignment:
| Q |
190 |
ccccatccatgttgcgatttagaagatctagaaca |
224 |
Q |
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| T |
7745286 |
ccccatccatgttgcgttttagaagatctagaaca |
7745252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 12542797 - 12542831
Alignment:
| Q |
190 |
ccccatccatgttgcgatttagaagatctagaaca |
224 |
Q |
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| T |
12542797 |
ccccatccatgttgcgttttagaagatctagaaca |
12542831 |
T |
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Target: scaffold0716 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 2642 - 2698
Alignment:
| Q |
10 |
atacgtagacaaccccatgtggaggtaccactcttgtaccacccttacttgtcaatt |
66 |
Q |
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||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2642 |
atacgtaaacacccctatgtggaggtaccactcttctaccacccttacttgtcaatt |
2698 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 45632477 - 45632521
Alignment:
| Q |
22 |
ccccatgtggaggtaccactcttgtaccacccttacttgtcaatt |
66 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
45632477 |
ccccatgtggaggtaacactcttctaccacccttacttgtcaatt |
45632521 |
T |
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