View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9592_low_53 (Length: 229)

Name: NF9592_low_53
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9592_low_53
NF9592_low_53
[»] chr1 (2 HSPs)
chr1 (14-211)||(49446999-49447205)
chr1 (14-105)||(12855840-12855932)
[»] chr8 (3 HSPs)
chr8 (14-106)||(13029210-13029302)
chr8 (14-75)||(35091719-35091780)
chr8 (14-72)||(35091198-35091256)
[»] chr6 (3 HSPs)
chr6 (15-103)||(27120488-27120577)
chr6 (14-74)||(27118650-27118710)
chr6 (22-72)||(27120958-27121008)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 49447205 - 49446999
Alignment:
Q  14 gcaaagggaatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggagggaaaaattaaggtaaaattagagttggggtcagctagaggcat---- 109  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||  |        
T  49447205 gcaaagggaatgagaaagtcaaatttgagcatttaatgtgtggcaaatgaagggaaaaattaaggtaaaattagagttggggttagctagaggggttaag 49447106  T
Q  110 -----ataataagagattttaaactaacactaagtttgcttgaactatttatagtattttctgtcttgaattttgcaactatttattataaccatagtag 204  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49447105 atttaataataagagattttaaactaacactaagtttgcttgaactatttatagtattttctgtcttgagttttgcaactatttattataaccatagtag 49447006  T
Q  205 tttatgg 211  Q
    |||||||    
T  49447005 tttatgg 49446999  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 12855840 - 12855932
Alignment:
Q  14 gcaaagggaatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggag-ggaaaaattaaggtaaaattagagttggggtcagctagag 105  Q
    |||||| |||||| || ||||||||||| |||||||||| | ||||| |||| | |||||||| | ||||||||| |||  ||| ||||||||    
T  12855840 gcaaagagaatgagaatgtcaaatttgagcatttaatgtattgcaaagggagagaaaaaattaggataaaattagggtttaggttagctagag 12855932  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 13029210 - 13029302
Alignment:
Q  14 gcaaagggaatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggagggaaaaattaaggtaaaattagagttggggtcagctagagg 106  Q
    ||||||| |||||||| |||| || ||| |||||||||  ||||||| |||||||||||||| ||||||| ||| ||| |||| |||||||||    
T  13029210 gcaaaggaaatgaaaaggtcatatgtgagcatttaatgcatggcaaagggagggaaaaattagggtaaaactagggttagggttagctagagg 13029302  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 35091719 - 35091780
Alignment:
Q  14 gcaaagggaatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggagggaaaaatta 75  Q
    ||||||||||||| || | ||||| ||| ||||||||| |||||||| ||||||||||||||    
T  35091719 gcaaagggaatgagaaggacaaatgtgagcatttaatgcgtggcaaagggagggaaaaatta 35091780  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 35091256 - 35091198
Alignment:
Q  14 gcaaagggaatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggagggaaaaa 72  Q
    ||||||||||||| || ||||||| ||| ||||||||| | |||||| |||||||||||    
T  35091256 gcaaagggaatgagaaggtcaaatgtgagcatttaatgcgcggcaaagggagggaaaaa 35091198  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 27120488 - 27120577
Alignment:
Q  15 caaagggaatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggagg-gaaaaattaaggtaaaattagagttggggtcagctag 103  Q
    |||||||||||  |||||||||| ||||||||||||| ||| |||| |||||  |||||||| | ||||||||| ||||| || ||||||    
T  27120488 caaagggaatgtgaaagtcaaatgtgaacatttaatgcgtgtcaaaaggaggaaaaaaattaggttaaaattagggttggtgttagctag 27120577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 27118650 - 27118710
Alignment:
Q  14 gcaaagggaatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggagggaaaaatt 74  Q
    |||||| |||||| |||||||||| | | |||||||||||||||||| |||||| ||||||    
T  27118650 gcaaagagaatgagaaagtcaaatgtcagcatttaatgtgtggcaaagggaggggaaaatt 27118710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 27120958 - 27121008
Alignment:
Q  22 aatgaaaaagtcaaatttgaacatttaatgtgtggcaaatggagggaaaaa 72  Q
    ||||| |||||||||| ||| |||| ||||||||||||||| |||||||||    
T  27120958 aatgagaaagtcaaatgtgagcattcaatgtgtggcaaatgaagggaaaaa 27121008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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