View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9592_low_57 (Length: 218)
Name: NF9592_low_57
Description: NF9592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9592_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 41166609 - 41166656
Alignment:
| Q |
154 |
caaaacgtgacttaatacgttcatactttttatatatactataggagt |
201 |
Q |
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| T |
41166609 |
caaaacgtgacttaatacgttcatactttttatatatactataggagt |
41166656 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 41166467 - 41166509
Alignment:
| Q |
9 |
agaagcataggaaggtaattaattcaaagtgcagtccaacaaa |
51 |
Q |
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| T |
41166467 |
agaagcataggaaggtaattaattcaaagttcagtccaacaaa |
41166509 |
T |
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