View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9593_low_1 (Length: 369)
Name: NF9593_low_1
Description: NF9593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9593_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 8739814 - 8740155
Alignment:
| Q |
11 |
aagcagagacatcacaaatattaaattgaacaattttgacattgttgtaaaattattagtactactttcataaatattaatttctgctttaataaatttt |
110 |
Q |
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| T |
8739814 |
aagccgagacatcacaaatattaaattgaacaattttgacattgttgtaaaattattagtactactttcataaatattaatttccgctttaataaatttt |
8739913 |
T |
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| Q |
111 |
gattaccctgcaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagatgaaaattatacaatggtgtgtga |
210 |
Q |
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| T |
8739914 |
gattaccctccaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagaggaaaattatacaatggtgtgtga |
8740013 |
T |
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| Q |
211 |
tgaaggggagtcttccagacaaatgacaacctcttttcctccaactattgattttgttcttggacttagattctgtcctacagatcaagagcttgttaa- |
309 |
Q |
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| T |
8740014 |
tgaaggggagtcttccagacaaatgacaacctcttttcctccaactattgattttgttcttggacttagattctgtcctacagatgaagagcttgttaat |
8740113 |
T |
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| Q |
310 |
gtactaccttaaaaataagatacttggtaatgattccattgt |
351 |
Q |
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| T |
8740114 |
gtactaccttaaaaataagatacctggtaatgattccattgt |
8740155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 103 - 351
Target Start/End: Original strand, 8723256 - 8723501
Alignment:
| Q |
103 |
taaattttgattaccctgcaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagatgaaaattatacaatg |
202 |
Q |
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| T |
8723256 |
taaatgttgattacgctccaaaattttgtagaggacttttgttttatgtcgcttgatgaaaaaagccgagataaaaggcgaagaggaaaatgatacaatg |
8723355 |
T |
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| Q |
203 |
gtgtgtgatgaaggggagtcttccagacaaatgacaacctcttttcctccaactattgattttgttcttggacttagattctgtcctacagatcaagagc |
302 |
Q |
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| T |
8723356 |
atgtgtgatgaaggggagcctagcagacaaatgacaccctcatttcctcccattcttcattatg---ttggattcagattttgtccaacaggtgaagagc |
8723452 |
T |
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| Q |
303 |
ttgttaagtactaccttaaaaataagatacttggtaatgattccattgt |
351 |
Q |
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| T |
8723453 |
tagttaatcactaccttagaaataagttgcttggtaatgacgccattgt |
8723501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 8691266 - 8691382
Alignment:
| Q |
104 |
aaattttgattaccctgcaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagatgaaaattatacaatgg |
203 |
Q |
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| T |
8691266 |
aaatgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatga |
8691365 |
T |
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| Q |
204 |
tgtgtgatgaaggggag |
220 |
Q |
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| T |
8691366 |
tatgtgatgaaggggag |
8691382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 8690746 - 8690807
Alignment:
| Q |
290 |
acagatcaagagcttgttaagtactaccttaaaaataagatacttggtaatgattccattgt |
351 |
Q |
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| T |
8690746 |
acagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgt |
8690807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 8705018 - 8705079
Alignment:
| Q |
290 |
acagatcaagagcttgttaagtactaccttaaaaataagatacttggtaatgattccattgt |
351 |
Q |
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| T |
8705018 |
acagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgt |
8705079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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