View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9593_low_2 (Length: 365)
Name: NF9593_low_2
Description: NF9593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9593_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 51482833 - 51482499
Alignment:
| Q |
17 |
cacagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagat |
116 |
Q |
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| T |
51482833 |
cacagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccattgaagtactaccctggtcaagat |
51482734 |
T |
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| Q |
117 |
gttgcaaacaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacc |
216 |
Q |
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| T |
51482733 |
gttgcaaacaacttggattgggttaatgtaatgacctatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacc |
51482634 |
T |
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| Q |
217 |
caactggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
51482633 |
caactggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaaacaaacttgcacttggtttaccctactatggttataa |
51482534 |
T |
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| Q |
317 |
gtggagattggcagatcctaataaccgtagaattt |
351 |
Q |
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| T |
51482533 |
gtggagattggcagatcctaataaccgtagaattt |
51482499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 51467921 - 51467590
Alignment:
| Q |
19 |
cagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgt |
118 |
Q |
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|||| ||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51467921 |
cagagtctaggagttccgacaagccggaactgttgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgt |
51467822 |
T |
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| Q |
119 |
tgcaaacaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaaccca |
218 |
Q |
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| T |
51467821 |
tgcaaacaacttggattgggttaatgtaatgacctatgacctttacatctcagatataaatccaactcaaacacaaccacccgctcctttgaaaaaccca |
51467722 |
T |
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| Q |
219 |
actggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataagt |
318 |
Q |
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|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51467721 |
actggccaatttagtgcagatgaaggtatcacaaaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataagt |
51467622 |
T |
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| Q |
319 |
ggagattggcagatcctaataaccgtagaatt |
350 |
Q |
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|||| ||||||||||||||||| | ||||||| |
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| T |
51467621 |
ggagtttggcagatcctaataaacatagaatt |
51467590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 24 - 342
Target Start/End: Complemental strand, 48424334 - 48424016
Alignment:
| Q |
24 |
tctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgttgcaa |
123 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| | | | |||||||||| ||||| ||| |||||| |
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| T |
48424334 |
tctagcagttctggcaagccgacactgctgttatctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaa |
48424235 |
T |
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| Q |
124 |
acaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacccaactgg |
223 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| || |
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| T |
48424234 |
acaacttggattgggtcaatgtaatgacttatgaccttttcatctcagataggtatcaaactcaaacacaaccacctgctcctttgaaaaacccaacagg |
48424135 |
T |
|
| Q |
224 |
cttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataagtggaga |
323 |
Q |
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| ||||||| |||||||||||||| |||||| | |||||||| || |||||||||||||| ||| | ||| |||| |||||||||| |||||||| |
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| T |
48424134 |
ccaattcagtgtagatgaaggtatcacaaaatggattgggttaggagttccaaaaagcaaactagcattgggtgtacctttctatggtttcaagtggagt |
48424035 |
T |
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| Q |
324 |
ttggcagatcctaataacc |
342 |
Q |
| |
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||| ||||||||||||||| |
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| T |
48424034 |
ttgtcagatcctaataacc |
48424016 |
T |
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