View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9593_low_3 (Length: 355)
Name: NF9593_low_3
Description: NF9593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9593_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 14244162 - 14244300
Alignment:
| Q |
158 |
tttattctcgactagaactgcaagacgcaaaacacttgc-ataaaaacaaagaaacggatacaaatggcgtcgcaaatatacggaacaccaacaacccaa |
256 |
Q |
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|||||||||||| |||| |||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14244162 |
tttattctcgacgagaattgcaagacgcaaaacactcacggaaaaaacaaagaaacagatacaaatggcgccgcaaatatacggaacaccaacaacccaa |
14244261 |
T |
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| Q |
257 |
acacccaaagcaattgaaaataatgaggccgaagtatac |
295 |
Q |
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| T |
14244262 |
gctcccaaaacgattctaaataatgaggccgaagtatac |
14244300 |
T |
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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 6354712 - 6354850
Alignment:
| Q |
158 |
tttattctcgactagaactgcaagacgcaaaacacttgc-ataaaaacaaagaaacggatacaaatggcgtcgcaaatatacggaacaccaacaacccaa |
256 |
Q |
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|||||||||||| |||| |||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6354712 |
tttattctcgacgagaattgcaagacgcaaaacactcacggaaaaaacaaagaaacagatacaaatggcgccgcaaatatacggaacaccaacaacccaa |
6354811 |
T |
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| Q |
257 |
acacccaaagcaattgaaaataatgaggccgaagtatac |
295 |
Q |
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| T |
6354812 |
gctcccaaaacgattctaaataatgaggccgaagtatac |
6354850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 1874889 - 1874808
Alignment:
| Q |
214 |
gatacaaatggcgtcgcaaatatacggaacaccaacaacccaaacacccaaagcaattgaaaataatgaggccgaagtatac |
295 |
Q |
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| T |
1874889 |
gatacaaatggcgccgcaaatatacggaacaccaacagcccaagctcccaaaacgattctaaataatgaggccgaagtatac |
1874808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 295
Target Start/End: Original strand, 2314889 - 2315041
Alignment:
| Q |
142 |
tttttgaaatggcaaatttattctcgactagaactgcaagacgcaaaacacttgcataaaaacaaagaaacggatacaaatggcgtcgcaaatatacgga |
241 |
Q |
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|||||||||||||||||||||| |||| || | |||||| ||||||||||| | ||||| |||||| |||||||||||| | ||||| |||| |
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| T |
2314889 |
tttttgaaatggcaaatttatta-cgacgaggattgcaaggcgcaaaacactcacgaaaaaatgaagaaataaatacaaatggcgctgtaaatacacggg |
2314987 |
T |
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| Q |
242 |
acaccaacaacccaaacacccaaagcaattgaaaataatgaggccgaagtatac |
295 |
Q |
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|||||||||| ||||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
2314988 |
acaccaacaatccaaacacccaaaacaaaacaaaataatgagaccgaagtatac |
2315041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 44464139 - 44464107
Alignment:
| Q |
137 |
ttttctttttgaaatggcaaatttattctcgac |
169 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
44464139 |
ttttttttttgaaatggcaaatttattctcgac |
44464107 |
T |
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