View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9594_12 (Length: 321)
Name: NF9594_12
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_12 |
 | |
|
| [»] scaffold0087 (5 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 313
Target Start/End: Complemental strand, 5164175 - 5163866
Alignment:
| Q |
4 |
tcgaataaagtcgatacatttgataaagatagattcgttgatgagataaaacaatactataattgcaaatatgttttgaggctgctttgcgaatttttgc |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5164175 |
tcgaataaagtcgatacatttcataaagatagattcgttgatgagataaaacaatactataattgcaaatatgttttgaggctgctttgcgaatttttgc |
5164076 |
T |
|
| Q |
104 |
ttctaaaattcattataatagttttttgtatgnnnnnnnntacataatttatgtaaattaaaaaatctgaaattcgagtccgtacttggct-gagttcac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||| |||| || |||||||| |
|
|
| T |
5164075 |
ttctaaaattcattataatagttttttgtatgaaaaaaaatacataatttaaataaataaaaaaatctgaaattctagtccgtgcttgactcgagttcac |
5163976 |
T |
|
| Q |
203 |
aaacttagttttcaataaatacaagagaaaaagagacaaagccgttaaagagaccaatccctaagctaacataaaacccaatggttatgagcttatcttc |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5163975 |
aaac-tagttttcaataaatacaagagaaaaagagacaaagccgttaaagagaccaagccctaagctaacataaaacccaatggttatgagcttatcttc |
5163877 |
T |
|
| Q |
303 |
attcttcatct |
313 |
Q |
| |
|
||||||||||| |
|
|
| T |
5163876 |
attcttcatct |
5163866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 5881527 - 5881478
Alignment:
| Q |
255 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5881527 |
accaatcaccaagctaacataaaacccaatggttatgagcttatcttcat |
5881478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 5884243 - 5884186
Alignment:
| Q |
255 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcattcttcatct |
313 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5884243 |
accaagccctaaggtaacataaaacccaaaggttatgagcttatcttca-tcttcatct |
5884186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 5762242 - 5762193
Alignment:
| Q |
255 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5762242 |
accaatcaccaagctaacataaaacccaaaggttatgagcttatcttcat |
5762193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 5831134 - 5831095
Alignment:
| Q |
265 |
aagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5831134 |
aagctaacataaaacccaaaggttatgagcttatcttcat |
5831095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 5854075 - 5854036
Alignment:
| Q |
265 |
aagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5854075 |
aagctaacataaaacccaaaggttatgagcttatcttcat |
5854036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 41254 - 41205
Alignment:
| Q |
255 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41254 |
accaatcaccaagctaacataaaacccaatggttatgagcttatcttcat |
41205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 13808 - 13759
Alignment:
| Q |
255 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13808 |
accaatcaccaagctaacataaaacccaaaggttatgagcttatcttcat |
13759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 20872 - 20824
Alignment:
| Q |
256 |
ccaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
20872 |
ccaagccccaagctaacataaaacccaaaggttattagcttatcttcat |
20824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 31220 - 31172
Alignment:
| Q |
256 |
ccaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
31220 |
ccaagccccaagctaacataaaacccaaaggttattagcttatcttcat |
31172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 35203 - 35164
Alignment:
| Q |
265 |
aagctaacataaaacccaatggttatgagcttatcttcat |
304 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35203 |
aagctaacataaaacccaaatgttatgagcttatcttcat |
35164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University