View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9594_13 (Length: 320)
Name: NF9594_13
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 17004052 - 17004371
Alignment:
| Q |
1 |
ataaatgaggctgtagtttacttggtttgaagccaatggaatacctctcttcttgagctgtttatatgcttcgcgtagtcggttttctgtataaatagaa |
100 |
Q |
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| T |
17004052 |
ataaatgaggctgtagtttacttggtttgaagccaatggaatacctctcttcttgagctgtttatatgcttcgcgtagtcggttttctgtataaatagaa |
17004151 |
T |
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| Q |
101 |
aaaaggaatgttaggtacttctgatcatagaactagaacttgttccataaaaagtattatggtacaagttagtcatagttttgcataaaattgaagtttg |
200 |
Q |
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| T |
17004152 |
aaaaggaatgttaggtacttctgatcatagaactagaactagttccataaaaagtattatggtacaagttagtcatagttttgcataaaattgaagttta |
17004251 |
T |
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| Q |
201 |
gaagactccaagacaaataatctatgaaccgccaacaaatcattgacaccggacaagacaatgacaccgacaccgatagtagtttgagaaaatagacgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17004252 |
gaagactccaagacaaataatctatgaaccgccaacaaatcattgacaccagacaagacaatgacaccgacaccgatagtagtttgagaaaatagacgtg |
17004351 |
T |
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| Q |
301 |
aatatgtaatgcgtcggtgc |
320 |
Q |
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||||||||||| |||||||| |
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| T |
17004352 |
aatatgtaatgtgtcggtgc |
17004371 |
T |
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